miRNA display CGI


Results 101 - 120 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 37866 0.68 0.502
Target:  5'- gGC-CGGCGAgGCucaGGCccggacggUCGCGGCGGu -3'
miRNA:   3'- -CGaGCCGCU-CGuagCUG--------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38043 0.68 0.471756
Target:  5'- aCUCuGUG-GCAUCGGaUCGCGGUGGc -3'
miRNA:   3'- cGAGcCGCuCGUAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38319 0.67 0.512271
Target:  5'- aGCUCGGCGccGGC-UCGugUCuGCcGCaGGc -3'
miRNA:   3'- -CGAGCCGC--UCGuAGCugAG-CGuCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 38403 0.71 0.320778
Target:  5'- gGCUCGGCGucGGCGaCGACaUCGagcGCGGc -3'
miRNA:   3'- -CGAGCCGC--UCGUaGCUG-AGCgu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 38706 0.66 0.607782
Target:  5'- uCUCGGUGAGCugCGcaaCGCGGUGGu -3'
miRNA:   3'- cGAGCCGCUCGuaGCugaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 39114 0.69 0.399622
Target:  5'- cCUCGGCGAGCagcccGcaugcgcaguugaaaUCGGC-CGCGGCGa -3'
miRNA:   3'- cGAGCCGCUCG-----U---------------AGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 39337 0.67 0.522627
Target:  5'- gGCaUCGGCG-GCAcCGGC-CGCgacacAGCGGc -3'
miRNA:   3'- -CG-AGCCGCuCGUaGCUGaGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 39418 0.7 0.378348
Target:  5'- aGCgUCGGCGcGGUcgCGGCccgCGCGGCGcGg -3'
miRNA:   3'- -CG-AGCCGC-UCGuaGCUGa--GCGUCGC-C- -5'
26261 3' -57.3 NC_005345.2 + 40207 0.68 0.502
Target:  5'- aGCUCGGC-AGCuacGUCGAgaCGguGCcGGu -3'
miRNA:   3'- -CGAGCCGcUCG---UAGCUgaGCguCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 40249 0.71 0.344621
Target:  5'- --cUGGCGAGCGggGACggggCGCcGGCGGg -3'
miRNA:   3'- cgaGCCGCUCGUagCUGa---GCG-UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 40730 0.75 0.178369
Target:  5'- cGCUCGGCGuccAGCcgcgccccGUCGAC-CGgCAGCGGc -3'
miRNA:   3'- -CGAGCCGC---UCG--------UAGCUGaGC-GUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 41087 0.68 0.481738
Target:  5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3'
miRNA:   3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42071 0.8 0.080221
Target:  5'- uGCUCGGCGAcaGCGUCGAgCUaCGCGGCa- -3'
miRNA:   3'- -CGAGCCGCU--CGUAGCU-GA-GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42136 0.7 0.38712
Target:  5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3'
miRNA:   3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42527 0.69 0.420713
Target:  5'- gGCUCGGCaccgacaucacGAGCAucguccgacacgagUCGACgaGCAGCGa -3'
miRNA:   3'- -CGAGCCG-----------CUCGU--------------AGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 43297 0.73 0.225352
Target:  5'- cCUCGGCGAG-GUCGACgCGCcacagccggaaccAGCGGg -3'
miRNA:   3'- cGAGCCGCUCgUAGCUGaGCG-------------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43464 0.69 0.432927
Target:  5'- --gCGGCGAGUucgCGGCgcagCGCGGuCGGc -3'
miRNA:   3'- cgaGCCGCUCGua-GCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 43850 0.71 0.336534
Target:  5'- uGCcCGGUcgacgGGGCGUCGGCcgggacucCGCGGCGGa -3'
miRNA:   3'- -CGaGCCG-----CUCGUAGCUGa-------GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44038 0.72 0.263322
Target:  5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3'
miRNA:   3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.