Results 121 - 131 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26261 | 3' | -57.3 | NC_005345.2 | + | 44256 | 1.11 | 0.000429 |
Target: 5'- aGCUCGGCGAGCAUCGACUCGCAGCGGc -3' miRNA: 3'- -CGAGCCGCUCGUAGCUGAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 44657 | 0.74 | 0.208987 |
Target: 5'- uGCUgCGGUGGGCA-CGGCUCGUcgAGcCGGa -3' miRNA: 3'- -CGA-GCCGCUCGUaGCUGAGCG--UC-GCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 44918 | 0.7 | 0.378348 |
Target: 5'- cGCagCGGCGAcCAUCGGCUCggcguaccGCAGCa- -3' miRNA: 3'- -CGa-GCCGCUcGUAGCUGAG--------CGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45080 | 0.68 | 0.500978 |
Target: 5'- gGCUCGGCGcaccgaGGCAuaccgugUCGgcGCUCGuCGGCGc -3' miRNA: 3'- -CGAGCCGC------UCGU-------AGC--UGAGC-GUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45161 | 0.68 | 0.452114 |
Target: 5'- gGCUCGuccgacCGGGCcUCGACgUCGCAGCc- -3' miRNA: 3'- -CGAGCc-----GCUCGuAGCUG-AGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45264 | 0.69 | 0.396024 |
Target: 5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3' miRNA: 3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45532 | 0.68 | 0.46188 |
Target: 5'- cGCUUGcacugcGCGAGCAgggCGACagcggccgaggUCGgGGCGGg -3' miRNA: 3'- -CGAGC------CGCUCGUa--GCUG-----------AGCgUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 45712 | 0.66 | 0.596982 |
Target: 5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3' miRNA: 3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 46819 | 0.67 | 0.533063 |
Target: 5'- cGCUCGGacgcCGAGuCGUUGACgcacuUCGCcgAGUGGa -3' miRNA: 3'- -CGAGCC----GCUC-GUAGCUG-----AGCG--UCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 48199 | 0.68 | 0.497917 |
Target: 5'- uGCUCGGgGAGCAccuagugcgcgaccUCGACgacgugacgccggUCGaucuGCGGg -3' miRNA: 3'- -CGAGCCgCUCGU--------------AGCUG-------------AGCgu--CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 48563 | 0.71 | 0.313109 |
Target: 5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3' miRNA: 3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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