miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 36088 0.72 0.270699
Target:  5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36028 0.66 0.596982
Target:  5'- cGCaCGGCGGGCGUuCGAggugaaagCGCGGCa- -3'
miRNA:   3'- -CGaGCCGCUCGUA-GCUga------GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 35869 0.68 0.46188
Target:  5'- cGCacCGGCGAGCugcCGG--UGCAGCGGu -3'
miRNA:   3'- -CGa-GCCGCUCGua-GCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35842 0.66 0.596982
Target:  5'- gGCgCGGCGGGUGgcUCGGUUCG-GGCGGg -3'
miRNA:   3'- -CGaGCCGCUCGU--AGCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35175 0.72 0.270021
Target:  5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3'
miRNA:   3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 34739 0.74 0.214511
Target:  5'- cGCcCGGCaGGCGUCGGCgacgUGCAGcCGGa -3'
miRNA:   3'- -CGaGCCGcUCGUAGCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 34516 0.68 0.471756
Target:  5'- cGCggucgaGGCGGGCcgCGGcCUCGCGGgCGu -3'
miRNA:   3'- -CGag----CCGCUCGuaGCU-GAGCGUC-GCc -5'
26261 3' -57.3 NC_005345.2 + 33741 0.65 0.626186
Target:  5'- gGCUaCGGCGAGUcgaucgaccaggucAaCGACUCcCuGCGGa -3'
miRNA:   3'- -CGA-GCCGCUCG--------------UaGCUGAGcGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33556 0.71 0.334933
Target:  5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 33510 0.71 0.313109
Target:  5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3'
miRNA:   3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 33115 0.71 0.328586
Target:  5'- cGCUCGGCGA-CAaCGACggGCuGUGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32805 0.7 0.38712
Target:  5'- uGCUCGGCGcguuccgcgaGGCAcUCGGgaaGCAGUGGg -3'
miRNA:   3'- -CGAGCCGC----------UCGU-AGCUgagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32594 0.69 0.405059
Target:  5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3'
miRNA:   3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 32516 0.68 0.481738
Target:  5'- uGC-CGGCGGGCGgccCGAUcUGC-GCGGg -3'
miRNA:   3'- -CGaGCCGCUCGUa--GCUGaGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 31938 0.69 0.396024
Target:  5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 31601 0.67 0.554149
Target:  5'- uGCUCGGCGcGGCccgCGGaUCGCAugGCGa -3'
miRNA:   3'- -CGAGCCGC-UCGua-GCUgAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 30676 0.71 0.344621
Target:  5'- --gCGGCGAGCAucuUCGGgUCGCGGgaccCGGu -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUgAGCGUC----GCC- -5'
26261 3' -57.3 NC_005345.2 + 30226 0.73 0.237871
Target:  5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3'
miRNA:   3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30161 0.76 0.1518
Target:  5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3'
miRNA:   3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 29810 0.72 0.290941
Target:  5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3'
miRNA:   3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.