miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 28758 0.66 0.618604
Target:  5'- --aCGGCGGGgc-CGGCUCGguGaCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCguC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 28398 0.67 0.554149
Target:  5'- cGCcgCGGCG-GCAgCGGCagGCAggGCGGa -3'
miRNA:   3'- -CGa-GCCGCuCGUaGCUGagCGU--CGCC- -5'
26261 3' -57.3 NC_005345.2 + 28145 0.67 0.569056
Target:  5'- gGC-CGGCGAacGCGUCGcccggucggcguucCUCGCcGCGGc -3'
miRNA:   3'- -CGaGCCGCU--CGUAGCu-------------GAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27904 0.75 0.193147
Target:  5'- aGCUCGGCGAcGCGUUcgGugUCGCuuccgagcGCGGu -3'
miRNA:   3'- -CGAGCCGCU-CGUAG--CugAGCGu-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 27534 0.75 0.178369
Target:  5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3'
miRNA:   3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27303 0.68 0.498936
Target:  5'- aGCUCGcccgcacgcaugccGCGcAGCAgUCGAUgucgCGUGGCGGg -3'
miRNA:   3'- -CGAGC--------------CGC-UCGU-AGCUGa---GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27186 0.7 0.369712
Target:  5'- gGCaUCGGCGcgGGCcgUGAUcgGCAGCGGg -3'
miRNA:   3'- -CG-AGCCGC--UCGuaGCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 26055 0.66 0.618604
Target:  5'- cCUCGGCGAGCGcCuGCUCGaacuGGCu- -3'
miRNA:   3'- cGAGCCGCUCGUaGcUGAGCg---UCGcc -5'
26261 3' -57.3 NC_005345.2 + 25699 0.69 0.439588
Target:  5'- cGCUCGGCGugaccgguccggacGGCGaaccCGACacccgggcgUCGCGGUGGu -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa---GCUG---------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25662 0.67 0.532016
Target:  5'- -gUCGGaCGAGCcgaagugAUCGGCcUGCGGCGa -3'
miRNA:   3'- cgAGCC-GCUCG-------UAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 25139 0.69 0.414223
Target:  5'- cCUCGGCGAGCG-CGAUcgCGCcgacgaacGGCGa -3'
miRNA:   3'- cGAGCCGCUCGUaGCUGa-GCG--------UCGCc -5'
26261 3' -57.3 NC_005345.2 + 24829 0.67 0.543573
Target:  5'- uGCUCGG-GuuCGaCGGCUCGCgcaAGCGGu -3'
miRNA:   3'- -CGAGCCgCucGUaGCUGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24391 0.66 0.618604
Target:  5'- aGCUCGGCGgcAGCAucaUCGAgaCGCcgaacGCGu -3'
miRNA:   3'- -CGAGCCGC--UCGU---AGCUgaGCGu----CGCc -5'
26261 3' -57.3 NC_005345.2 + 24346 0.67 0.512271
Target:  5'- --aCGGCGGGaucCGGCUCGCGaagaccauGCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCGU--------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 24205 0.71 0.328586
Target:  5'- -gUCGGggcCGAGU-UCGAgUCGCGGCGGc -3'
miRNA:   3'- cgAGCC---GCUCGuAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24065 0.69 0.423513
Target:  5'- cGCguaCGGCGAGCcgAUCGgccggccguggcACUCGguGCGu -3'
miRNA:   3'- -CGa--GCCGCUCG--UAGC------------UGAGCguCGCc -5'
26261 3' -57.3 NC_005345.2 + 23555 0.7 0.361211
Target:  5'- uGCUCGGCGuucuucggcAGCAcCGGCa-GCuGCGGg -3'
miRNA:   3'- -CGAGCCGC---------UCGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22665 0.67 0.533063
Target:  5'- uGCggaCGGuCGGGCAgUCG-CUCGUcguGGCGGu -3'
miRNA:   3'- -CGa--GCC-GCUCGU-AGCuGAGCG---UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.