miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12249 0.67 0.512271
Target:  5'- -gUCGaGCGAGCAggccCGGCUCGUu-CGGa -3'
miRNA:   3'- cgAGC-CGCUCGUa---GCUGAGCGucGCC- -5'
26261 3' -57.3 NC_005345.2 + 12198 0.72 0.290941
Target:  5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3'
miRNA:   3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11662 0.69 0.423513
Target:  5'- cGCcCGGCGGGaaCGUCGuaccGCUCGCccgcgcugcaGGCGGa -3'
miRNA:   3'- -CGaGCCGCUC--GUAGC----UGAGCG----------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 11570 0.66 0.575475
Target:  5'- cGCcCGGC-AGC-UCGACgacgggcgccUCGCGGUGGc -3'
miRNA:   3'- -CGaGCCGcUCGuAGCUG----------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 10854 0.66 0.596982
Target:  5'- cGC-CGGCGAGguaguaGUCGACggGCcacugcaaGGCGGg -3'
miRNA:   3'- -CGaGCCGCUCg-----UAGCUGagCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 10851 0.68 0.491821
Target:  5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3'
miRNA:   3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 10072 0.67 0.553089
Target:  5'- cGUcgCGGCGAGCGUCcACUcgaucgccgccugCGUAGCGc -3'
miRNA:   3'- -CGa-GCCGCUCGUAGcUGA-------------GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 9878 0.67 0.543573
Target:  5'- uGCUCGaCGAGCAgcagCGggccgaACUCGgCGGCGa -3'
miRNA:   3'- -CGAGCcGCUCGUa---GC------UGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 8734 0.69 0.405059
Target:  5'- cGCgucggUGGCGAGCG-CGACgacUGCAGCa- -3'
miRNA:   3'- -CGa----GCCGCUCGUaGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 8612 0.68 0.482741
Target:  5'- aGCUCGGCGAucacgaacguuccgGCGgcgucgcaguacaccUCGGCgccgaucgUCGCGGCGa -3'
miRNA:   3'- -CGAGCCGCU--------------CGU---------------AGCUG--------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 8098 0.82 0.063932
Target:  5'- uGUUCGGCGAGCAgugCGGC-CGCAGCu- -3'
miRNA:   3'- -CGAGCCGCUCGUa--GCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 8025 0.7 0.352847
Target:  5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3'
miRNA:   3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 7512 0.66 0.58621
Target:  5'- aUUCGGUGGGCGU--GCUgccgGCGGCGGu -3'
miRNA:   3'- cGAGCCGCUCGUAgcUGAg---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 7326 0.68 0.491821
Target:  5'- -gUCGGCGGaCGcCGAgUCGCAcGCGGu -3'
miRNA:   3'- cgAGCCGCUcGUaGCUgAGCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 6986 0.67 0.512271
Target:  5'- aGCUgcUGGcCGGGCGcCGACagGCAGCGu -3'
miRNA:   3'- -CGA--GCC-GCUCGUaGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 6830 0.7 0.360368
Target:  5'- --aUGGCGGGCGggaUCGACaugguccUCGCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUG-------AGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 5596 0.68 0.452114
Target:  5'- cGgUCGGCGAGCuuGUCGGCgacgaGCucGGCGa -3'
miRNA:   3'- -CgAGCCGCUCG--UAGCUGag---CG--UCGCc -5'
26261 3' -57.3 NC_005345.2 + 5438 0.66 0.58621
Target:  5'- cUUCGGCGGcGCccggGUCGGC-CGUAGgGGc -3'
miRNA:   3'- cGAGCCGCU-CG----UAGCUGaGCGUCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.