miRNA display CGI


Results 41 - 60 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 14791 0.68 0.471756
Target:  5'- cGCccCGGUGcGCuUCGACgucgaGCGGCGGg -3'
miRNA:   3'- -CGa-GCCGCuCGuAGCUGag---CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 22110 0.7 0.352847
Target:  5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3'
miRNA:   3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5'
26261 3' -57.3 NC_005345.2 + 20622 0.76 0.1518
Target:  5'- uCUCGGCGAcgggGCgAUCGAg-CGCAGCGGa -3'
miRNA:   3'- cGAGCCGCU----CG-UAGCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38043 0.68 0.471756
Target:  5'- aCUCuGUG-GCAUCGGaUCGCGGUGGc -3'
miRNA:   3'- cGAGcCGCuCGUAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30161 0.76 0.1518
Target:  5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3'
miRNA:   3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 11570 0.66 0.575475
Target:  5'- cGCcCGGC-AGC-UCGACgacgggcgccUCGCGGUGGc -3'
miRNA:   3'- -CGaGCCGcUCGuAGCUG----------AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27534 0.75 0.178369
Target:  5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3'
miRNA:   3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 31601 0.67 0.554149
Target:  5'- uGCUCGGCGcGGCccgCGGaUCGCAugGCGa -3'
miRNA:   3'- -CGAGCCGC-UCGua-GCUgAGCGU--CGCc -5'
26261 3' -57.3 NC_005345.2 + 46819 0.67 0.533063
Target:  5'- cGCUCGGacgcCGAGuCGUUGACgcacuUCGCcgAGUGGa -3'
miRNA:   3'- -CGAGCC----GCUC-GUAGCUG-----AGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 24346 0.67 0.512271
Target:  5'- --aCGGCGGGaucCGGCUCGCGaagaccauGCGGu -3'
miRNA:   3'- cgaGCCGCUCguaGCUGAGCGU--------CGCC- -5'
26261 3' -57.3 NC_005345.2 + 40207 0.68 0.502
Target:  5'- aGCUCGGC-AGCuacGUCGAgaCGguGCcGGu -3'
miRNA:   3'- -CGAGCCGcUCG---UAGCUgaGCguCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 7326 0.68 0.491821
Target:  5'- -gUCGGCGGaCGcCGAgUCGCAcGCGGu -3'
miRNA:   3'- cgAGCCGCUcGUaGCUgAGCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 10851 0.68 0.491821
Target:  5'- aGCUgCGGUGGGCG--GACUgcCGCAcGCGGc -3'
miRNA:   3'- -CGA-GCCGCUCGUagCUGA--GCGU-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 13267 0.68 0.46188
Target:  5'- --cCGGCGAGCA---GCUCGuCGGCGa -3'
miRNA:   3'- cgaGCCGCUCGUagcUGAGC-GUCGCc -5'
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4151 0.69 0.396024
Target:  5'- cGCUCGucgaGCGGGUGUCGACgcggcaggCGCucacggGGCGGc -3'
miRNA:   3'- -CGAGC----CGCUCGUAGCUGa-------GCG------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15325 0.7 0.378348
Target:  5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3'
miRNA:   3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33556 0.71 0.334933
Target:  5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 33510 0.71 0.313109
Target:  5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3'
miRNA:   3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 36088 0.72 0.270699
Target:  5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.