miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 15325 0.7 0.378348
Target:  5'- aGgUCGGU--GCGUCGGCcggggCGUAGCGGg -3'
miRNA:   3'- -CgAGCCGcuCGUAGCUGa----GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4151 0.69 0.396024
Target:  5'- cGCUCGucgaGCGGGUGUCGACgcggcaggCGCucacggGGCGGc -3'
miRNA:   3'- -CGAGC----CGCUCGUAGCUGa-------GCG------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27303 0.68 0.498936
Target:  5'- aGCUCGcccgcacgcaugccGCGcAGCAgUCGAUgucgCGUGGCGGg -3'
miRNA:   3'- -CGAGC--------------CGC-UCGU-AGCUGa---GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12359 0.69 0.432927
Target:  5'- -aUCGGCugcacgGGGCccgaCGcCUCGCAGCGGa -3'
miRNA:   3'- cgAGCCG------CUCGua--GCuGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 4360 0.68 0.481738
Target:  5'- cCUCgGGCGGGCGggCcGCUCGguGgGGg -3'
miRNA:   3'- cGAG-CCGCUCGUa-GcUGAGCguCgCC- -5'
26261 3' -57.3 NC_005345.2 + 41087 0.68 0.481738
Target:  5'- uGCUCGGCG-GCGagcUUGAUcUGCAGCu- -3'
miRNA:   3'- -CGAGCCGCuCGU---AGCUGaGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 30226 0.73 0.237871
Target:  5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3'
miRNA:   3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45712 0.66 0.596982
Target:  5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3'
miRNA:   3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 22315 0.68 0.478732
Target:  5'- cGCUCGGCGcgccgggugccggcAGCAgugaugCGGCgaGCAGCGc -3'
miRNA:   3'- -CGAGCCGC--------------UCGUa-----GCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 36665 0.68 0.481738
Target:  5'- aCUCGGCGAGCuccgCGAgaUCGUcGCGc -3'
miRNA:   3'- cGAGCCGCUCGua--GCUg-AGCGuCGCc -5'
26261 3' -57.3 NC_005345.2 + 38403 0.71 0.320778
Target:  5'- gGCUCGGCGucGGCGaCGACaUCGagcGCGGc -3'
miRNA:   3'- -CGAGCCGC--UCGUaGCUG-AGCgu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 18935 0.71 0.305581
Target:  5'- cGCgUCGGCGucGaCGUUGAuCUCGUGGCGGc -3'
miRNA:   3'- -CG-AGCCGCu-C-GUAGCU-GAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 3430 0.72 0.290224
Target:  5'- cGCggCGGCGGGCggCGaugcgggccccgaGCUCGC-GCGGg -3'
miRNA:   3'- -CGa-GCCGCUCGuaGC-------------UGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44038 0.72 0.263322
Target:  5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3'
miRNA:   3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36339 0.73 0.231839
Target:  5'- gGCgaacCGGCGGGCcgagCGGCUCG-GGCGGg -3'
miRNA:   3'- -CGa---GCCGCUCGua--GCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 34739 0.74 0.214511
Target:  5'- cGCcCGGCaGGCGUCGGCgacgUGCAGcCGGa -3'
miRNA:   3'- -CGaGCCGcUCGUAGCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 18903 0.74 0.208442
Target:  5'- uGCUCGGCG-GCcgCGAucaugucCUCGCGGCu- -3'
miRNA:   3'- -CGAGCCGCuCGuaGCU-------GAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 24205 0.71 0.328586
Target:  5'- -gUCGGggcCGAGU-UCGAgUCGCGGCGGc -3'
miRNA:   3'- cgAGCC---GCUCGuAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 9176 0.67 0.543573
Target:  5'- aCUCGGCGAGCGUggCGAggaaUCGCGcuguuGcCGGa -3'
miRNA:   3'- cGAGCCGCUCGUA--GCUg---AGCGU-----C-GCC- -5'
26261 3' -57.3 NC_005345.2 + 27569 0.67 0.553089
Target:  5'- cGUUCGGgGGGcCGUCGGgccguCUCGCGccaacguGCGGc -3'
miRNA:   3'- -CGAGCCgCUC-GUAGCU-----GAGCGU-------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.