miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 45712 0.66 0.596982
Target:  5'- gGCg-GGCGGGgGUCuGCgugCGCAGCGu -3'
miRNA:   3'- -CGagCCGCUCgUAGcUGa--GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 10854 0.66 0.596982
Target:  5'- cGC-CGGCGAGguaguaGUCGACggGCcacugcaaGGCGGg -3'
miRNA:   3'- -CGaGCCGCUCg-----UAGCUGagCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 42136 0.7 0.38712
Target:  5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3'
miRNA:   3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 44918 0.7 0.378348
Target:  5'- cGCagCGGCGAcCAUCGGCUCggcguaccGCAGCa- -3'
miRNA:   3'- -CGa-GCCGCUcGUAGCUGAG--------CGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 34739 0.74 0.214511
Target:  5'- cGCcCGGCaGGCGUCGGCgacgUGCAGcCGGa -3'
miRNA:   3'- -CGaGCCGcUCGUAGCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 43297 0.73 0.225352
Target:  5'- cCUCGGCGAG-GUCGACgCGCcacagccggaaccAGCGGg -3'
miRNA:   3'- cGAGCCGCUCgUAGCUGaGCG-------------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36339 0.73 0.231839
Target:  5'- gGCgaacCGGCGGGCcgagCGGCUCG-GGCGGg -3'
miRNA:   3'- -CGa---GCCGCUCGua--GCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30226 0.73 0.237871
Target:  5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3'
miRNA:   3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44038 0.72 0.263322
Target:  5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3'
miRNA:   3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 3430 0.72 0.290224
Target:  5'- cGCggCGGCGGGCggCGaugcgggccccgaGCUCGC-GCGGg -3'
miRNA:   3'- -CGa-GCCGCUCGuaGC-------------UGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18935 0.71 0.305581
Target:  5'- cGCgUCGGCGucGaCGUUGAuCUCGUGGCGGc -3'
miRNA:   3'- -CG-AGCCGCu-C-GUAGCU-GAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38403 0.71 0.320778
Target:  5'- gGCUCGGCGucGGCGaCGACaUCGagcGCGGc -3'
miRNA:   3'- -CGAGCCGC--UCGUaGCUG-AGCgu-CGCC- -5'
26261 3' -57.3 NC_005345.2 + 24205 0.71 0.328586
Target:  5'- -gUCGGggcCGAGU-UCGAgUCGCGGCGGc -3'
miRNA:   3'- cgAGCC---GCUCGuAGCUgAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 43850 0.71 0.336534
Target:  5'- uGCcCGGUcgacgGGGCGUCGGCcgggacucCGCGGCGGa -3'
miRNA:   3'- -CGaGCCG-----CUCGUAGCUGa-------GCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30676 0.71 0.344621
Target:  5'- --gCGGCGAGCAucuUCGGgUCGCGGgaccCGGu -3'
miRNA:   3'- cgaGCCGCUCGU---AGCUgAGCGUC----GCC- -5'
26261 3' -57.3 NC_005345.2 + 40249 0.71 0.344621
Target:  5'- --cUGGCGAGCGggGACggggCGCcGGCGGg -3'
miRNA:   3'- cgaGCCGCUCGUagCUGa---GCG-UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 23555 0.7 0.361211
Target:  5'- uGCUCGGCGuucuucggcAGCAcCGGCa-GCuGCGGg -3'
miRNA:   3'- -CGAGCCGC---------UCGUaGCUGagCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 27186 0.7 0.369712
Target:  5'- gGCaUCGGCGcgGGCcgUGAUcgGCAGCGGg -3'
miRNA:   3'- -CG-AGCCGC--UCGuaGCUGagCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 39418 0.7 0.378348
Target:  5'- aGCgUCGGCGcGGUcgCGGCccgCGCGGCGcGg -3'
miRNA:   3'- -CG-AGCCGC-UCGuaGCUGa--GCGUCGC-C- -5'
26261 3' -57.3 NC_005345.2 + 22247 0.7 0.378348
Target:  5'- cGgUCGGCGAGCGcCGcCU-GCAGCGc -3'
miRNA:   3'- -CgAGCCGCUCGUaGCuGAgCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.