miRNA display CGI


Results 101 - 120 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 34739 0.74 0.214511
Target:  5'- cGCcCGGCaGGCGUCGGCgacgUGCAGcCGGa -3'
miRNA:   3'- -CGaGCCGcUCGUAGCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 18935 0.71 0.305581
Target:  5'- cGCgUCGGCGucGaCGUUGAuCUCGUGGCGGc -3'
miRNA:   3'- -CG-AGCCGCu-C-GUAGCU-GAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36339 0.73 0.231839
Target:  5'- gGCgaacCGGCGGGCcgagCGGCUCG-GGCGGg -3'
miRNA:   3'- -CGa---GCCGCUCGua--GCUGAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30226 0.73 0.237871
Target:  5'- cGCgcauccggCGGUGAGCcgGUCGACgaCGguGCGGg -3'
miRNA:   3'- -CGa-------GCCGCUCG--UAGCUGa-GCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44038 0.72 0.263322
Target:  5'- cGCcguaGGaGGGCAUCGggaugccgcGCUCGCGGCGGa -3'
miRNA:   3'- -CGag--CCgCUCGUAGC---------UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 39418 0.7 0.378348
Target:  5'- aGCgUCGGCGcGGUcgCGGCccgCGCGGCGcGg -3'
miRNA:   3'- -CG-AGCCGC-UCGuaGCUGa--GCGUCGC-C- -5'
26261 3' -57.3 NC_005345.2 + 22247 0.7 0.378348
Target:  5'- cGgUCGGCGAGCGcCGcCU-GCAGCGc -3'
miRNA:   3'- -CgAGCCGCUCGUaGCuGAgCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 32594 0.69 0.405059
Target:  5'- cGCgaCGGUGAGCAgccacccggugUGACgcaGCAGCGGc -3'
miRNA:   3'- -CGa-GCCGCUCGUa----------GCUGag-CGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 45532 0.68 0.46188
Target:  5'- cGCUUGcacugcGCGAGCAgggCGACagcggccgaggUCGgGGCGGg -3'
miRNA:   3'- -CGAGC------CGCUCGUa--GCUG-----------AGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 5596 0.68 0.452114
Target:  5'- cGgUCGGCGAGCuuGUCGGCgacgaGCucGGCGa -3'
miRNA:   3'- -CgAGCCGCUCG--UAGCUGag---CG--UCGCc -5'
26261 3' -57.3 NC_005345.2 + 43464 0.69 0.432927
Target:  5'- --gCGGCGAGUucgCGGCgcagCGCGGuCGGc -3'
miRNA:   3'- cgaGCCGCUCGua-GCUGa---GCGUC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 4259 0.69 0.423513
Target:  5'- uGCUCGGCGAaCAcCGg--CGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUcGUaGCugaGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 19954 0.69 0.414223
Target:  5'- aGCUUcccaGGCGcAGCcgGUCGuACUCGUucAGCGGg -3'
miRNA:   3'- -CGAG----CCGC-UCG--UAGC-UGAGCG--UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 25139 0.69 0.414223
Target:  5'- cCUCGGCGAGCG-CGAUcgCGCcgacgaacGGCGa -3'
miRNA:   3'- cGAGCCGCUCGUaGCUGa-GCG--------UCGCc -5'
26261 3' -57.3 NC_005345.2 + 8734 0.69 0.405059
Target:  5'- cGCgucggUGGCGAGCG-CGACgacUGCAGCa- -3'
miRNA:   3'- -CGa----GCCGCUCGUaGCUGa--GCGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 39114 0.69 0.399622
Target:  5'- cCUCGGCGAGCagcccGcaugcgcaguugaaaUCGGC-CGCGGCGa -3'
miRNA:   3'- cGAGCCGCUCG-----U---------------AGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 45264 0.69 0.396024
Target:  5'- --aCuGCGAGCGUCGGCggagaGCAGCGc -3'
miRNA:   3'- cgaGcCGCUCGUAGCUGag---CGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 31938 0.69 0.396024
Target:  5'- aGCUCGGCGGGUG-CGGgUgCgGguGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGUaGCUgA-G-CguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44918 0.7 0.378348
Target:  5'- cGCagCGGCGAcCAUCGGCUCggcguaccGCAGCa- -3'
miRNA:   3'- -CGa-GCCGCUcGUAGCUGAG--------CGUCGcc -5'
26261 3' -57.3 NC_005345.2 + 42136 0.7 0.38712
Target:  5'- --cCGGCGAcccgGCGUCGA-UCGCAGCa- -3'
miRNA:   3'- cgaGCCGCU----CGUAGCUgAGCGUCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.