miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26261 3' -57.3 NC_005345.2 + 19414 0.68 0.500978
Target:  5'- aGCUCGGuCGGcugcgccGCGUCGG-UCGCAcCGGg -3'
miRNA:   3'- -CGAGCC-GCU-------CGUAGCUgAGCGUcGCC- -5'
26261 3' -57.3 NC_005345.2 + 39337 0.67 0.522627
Target:  5'- gGCaUCGGCG-GCAcCGGC-CGCgacacAGCGGc -3'
miRNA:   3'- -CG-AGCCGCuCGUaGCUGaGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 15963 0.67 0.522627
Target:  5'- cGUUCGGCGcuGCcaGUUGGCgaugugCGCGGCGu -3'
miRNA:   3'- -CGAGCCGCu-CG--UAGCUGa-----GCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 37725 0.67 0.515369
Target:  5'- cGCUgCGGCGcggcgccggcuggucGGCGUCGucgaggucgagcuGCUCGCccgcaGGCGGc -3'
miRNA:   3'- -CGA-GCCGC---------------UCGUAGC-------------UGAGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 18027 0.67 0.512271
Target:  5'- cGC-CgGGCGAGCGcaggaacgCGGCcacgUUGCGGCGGg -3'
miRNA:   3'- -CGaG-CCGCUCGUa-------GCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 38319 0.67 0.512271
Target:  5'- aGCUCGGCGccGGC-UCGugUCuGCcGCaGGc -3'
miRNA:   3'- -CGAGCCGC--UCGuAGCugAG-CGuCG-CC- -5'
26261 3' -57.3 NC_005345.2 + 6986 0.67 0.512271
Target:  5'- aGCUgcUGGcCGGGCGcCGACagGCAGCGu -3'
miRNA:   3'- -CGA--GCC-GCUCGUaGCUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 18153 0.71 0.328586
Target:  5'- --cCGGCGucggguacAGCcUCGGCUCGguGUGGg -3'
miRNA:   3'- cgaGCCGC--------UCGuAGCUGAGCguCGCC- -5'
26261 3' -57.3 NC_005345.2 + 33510 0.71 0.313109
Target:  5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3'
miRNA:   3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 48563 0.71 0.313109
Target:  5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3'
miRNA:   3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 29810 0.72 0.290941
Target:  5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3'
miRNA:   3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12198 0.72 0.290941
Target:  5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3'
miRNA:   3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5'
26261 3' -57.3 NC_005345.2 + 36088 0.72 0.270699
Target:  5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3'
miRNA:   3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 35175 0.72 0.270021
Target:  5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3'
miRNA:   3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 44657 0.74 0.208987
Target:  5'- uGCUgCGGUGGGCA-CGGCUCGUcgAGcCGGa -3'
miRNA:   3'- -CGA-GCCGCUCGUaGCUGAGCG--UC-GCC- -5'
26261 3' -57.3 NC_005345.2 + 27534 0.75 0.178369
Target:  5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3'
miRNA:   3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5'
26261 3' -57.3 NC_005345.2 + 12616 0.75 0.178369
Target:  5'- cGCUCGGcCGGGCAcggcUCGGgcaccgggcCUCGgAGCGGg -3'
miRNA:   3'- -CGAGCC-GCUCGU----AGCU---------GAGCgUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 20622 0.76 0.1518
Target:  5'- uCUCGGCGAcgggGCgAUCGAg-CGCAGCGGa -3'
miRNA:   3'- cGAGCCGCU----CG-UAGCUgaGCGUCGCC- -5'
26261 3' -57.3 NC_005345.2 + 30161 0.76 0.1518
Target:  5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3'
miRNA:   3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5'
26261 3' -57.3 NC_005345.2 + 33741 0.65 0.626186
Target:  5'- gGCUaCGGCGAGUcgaucgaccaggucAaCGACUCcCuGCGGa -3'
miRNA:   3'- -CGA-GCCGCUCG--------------UaGCUGAGcGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.