Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26261 | 3' | -57.3 | NC_005345.2 | + | 16349 | 0.68 | 0.471756 |
Target: 5'- -gUCGGCG-GCAUCGcgGCcggCGCcGCGGu -3' miRNA: 3'- cgAGCCGCuCGUAGC--UGa--GCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 38043 | 0.68 | 0.471756 |
Target: 5'- aCUCuGUG-GCAUCGGaUCGCGGUGGc -3' miRNA: 3'- cGAGcCGCuCGUAGCUgAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 14791 | 0.68 | 0.471756 |
Target: 5'- cGCccCGGUGcGCuUCGACgucgaGCGGCGGg -3' miRNA: 3'- -CGa-GCCGCuCGuAGCUGag---CGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 22110 | 0.7 | 0.352847 |
Target: 5'- gGCUCgguGGCGAGCAgcacaGACUCGUcgacGUGGu -3' miRNA: 3'- -CGAG---CCGCUCGUag---CUGAGCGu---CGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 8025 | 0.7 | 0.352847 |
Target: 5'- aGCUCGaCGGGC-UCGACcucgCGCAGCu- -3' miRNA: 3'- -CGAGCcGCUCGuAGCUGa---GCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 30161 | 0.76 | 0.1518 |
Target: 5'- cGCUCGGgccgaggcuCGGGCAUCGACgCGUGGCGc -3' miRNA: 3'- -CGAGCC---------GCUCGUAGCUGaGCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 20622 | 0.76 | 0.1518 |
Target: 5'- uCUCGGCGAcgggGCgAUCGAg-CGCAGCGGa -3' miRNA: 3'- cGAGCCGCU----CG-UAGCUgaGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 12616 | 0.75 | 0.178369 |
Target: 5'- cGCUCGGcCGGGCAcggcUCGGgcaccgggcCUCGgAGCGGg -3' miRNA: 3'- -CGAGCC-GCUCGU----AGCU---------GAGCgUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 27534 | 0.75 | 0.178369 |
Target: 5'- cGCacgCGGCGAucacccgcgGCAUCGGCUCGUcggaccccGGCGGc -3' miRNA: 3'- -CGa--GCCGCU---------CGUAGCUGAGCG--------UCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 44657 | 0.74 | 0.208987 |
Target: 5'- uGCUgCGGUGGGCA-CGGCUCGUcgAGcCGGa -3' miRNA: 3'- -CGA-GCCGCUCGUaGCUGAGCG--UC-GCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 35175 | 0.72 | 0.270021 |
Target: 5'- -gUCGGCGcucaAGCccgcguUCGACgggaUCGCAGCGGg -3' miRNA: 3'- cgAGCCGC----UCGu-----AGCUG----AGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 36088 | 0.72 | 0.270699 |
Target: 5'- uGCUCGGCGGGCugaaagacaagguccUCGACgcggccaagUCGCucuucGGCGGg -3' miRNA: 3'- -CGAGCCGCUCGu--------------AGCUG---------AGCG-----UCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 12198 | 0.72 | 0.290941 |
Target: 5'- aCUCGacgaCGAGCGagGACUCGCcGCGGu -3' miRNA: 3'- cGAGCc---GCUCGUagCUGAGCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 29810 | 0.72 | 0.290941 |
Target: 5'- cGCUcgccccCGGCGAGCAgccCGGCaUCGUcGCGGc -3' miRNA: 3'- -CGA------GCCGCUCGUa--GCUG-AGCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 48563 | 0.71 | 0.313109 |
Target: 5'- gGCgUCGcggauGCGGGCGcCGaugaGCUCGCGGCGGg -3' miRNA: 3'- -CG-AGC-----CGCUCGUaGC----UGAGCGUCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 33510 | 0.71 | 0.313109 |
Target: 5'- -aUCGGCGAGCAguccgGGCagGCGGCGa -3' miRNA: 3'- cgAGCCGCUCGUag---CUGagCGUCGCc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 18153 | 0.71 | 0.328586 |
Target: 5'- --cCGGCGucggguacAGCcUCGGCUCGguGUGGg -3' miRNA: 3'- cgaGCCGC--------UCGuAGCUGAGCguCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 33115 | 0.71 | 0.328586 |
Target: 5'- cGCUCGGCGA-CAaCGACggGCuGUGGg -3' miRNA: 3'- -CGAGCCGCUcGUaGCUGagCGuCGCC- -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 33556 | 0.71 | 0.334933 |
Target: 5'- cGCUCGGCGcaGGCcugaaaaccgGACUCGCGGCu- -3' miRNA: 3'- -CGAGCCGC--UCGuag-------CUGAGCGUCGcc -5' |
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26261 | 3' | -57.3 | NC_005345.2 | + | 37587 | 0.71 | 0.344621 |
Target: 5'- gGCUgcaGGCGGGCGacCGGCUCGCGuuGCGa -3' miRNA: 3'- -CGAg--CCGCUCGUa-GCUGAGCGU--CGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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