miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26262 5' -58.5 NC_005345.2 + 33658 0.67 0.391348
Target:  5'- -aCGCCcgACuUGCGGCGCAgcuCgGGCUCg -3'
miRNA:   3'- uaGCGGaaUG-GCGUCGUGU---GgCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 28394 0.68 0.331216
Target:  5'- -gCGCC--GCCGCGGCGgCAgCGGCa- -3'
miRNA:   3'- uaGCGGaaUGGCGUCGU-GUgGCCGag -5'
26262 5' -58.5 NC_005345.2 + 30253 0.71 0.220181
Target:  5'- gAUCGCg--GCCGCcgAGCAgGCCgGGCUCg -3'
miRNA:   3'- -UAGCGgaaUGGCG--UCGUgUGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 45724 0.67 0.382333
Target:  5'- cAUCGCCgcccGCCGCcGCGCccGCCGcCUCu -3'
miRNA:   3'- -UAGCGGaa--UGGCGuCGUG--UGGCcGAG- -5'
26262 5' -58.5 NC_005345.2 + 11433 0.71 0.220181
Target:  5'- -gCGCCgcGCCGCAGCGCgaucccgcaggACUGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCGUCGUG-----------UGGCCGag -5'
26262 5' -58.5 NC_005345.2 + 48579 0.66 0.448241
Target:  5'- -gCGCCgaugaGCuCGCGGCgggcgaggacccACGCCGGCUg -3'
miRNA:   3'- uaGCGGaa---UG-GCGUCG------------UGUGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 12804 0.71 0.232106
Target:  5'- -cCGCCcgaGCCGCucGGCcCGCCGGUUCg -3'
miRNA:   3'- uaGCGGaa-UGGCG--UCGuGUGGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 34730 0.66 0.448241
Target:  5'- uUCGCCguaUACCGCGGggugauccuCGCGgCGGCg- -3'
miRNA:   3'- uAGCGGa--AUGGCGUC---------GUGUgGCCGag -5'
26262 5' -58.5 NC_005345.2 + 28157 0.66 0.445287
Target:  5'- cGUCGCCcggucggcguuccucGCCGCGGC-CAaggggCGGCUCg -3'
miRNA:   3'- -UAGCGGaa-------------UGGCGUCGuGUg----GCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 45512 0.67 0.41921
Target:  5'- -cCGCCggGCUGCggacGGCACACCugcGGCg- -3'
miRNA:   3'- uaGCGGaaUGGCG----UCGUGUGG---CCGag -5'
26262 5' -58.5 NC_005345.2 + 23477 0.67 0.409789
Target:  5'- aGUCGCCgcagGCCGau-CACuuCGGCUCg -3'
miRNA:   3'- -UAGCGGaa--UGGCgucGUGugGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 43994 0.67 0.408854
Target:  5'- cUCGUCggccGCCGCGGCGCguuccuccugaucGCCgGGUUCg -3'
miRNA:   3'- uAGCGGaa--UGGCGUCGUG-------------UGG-CCGAG- -5'
26262 5' -58.5 NC_005345.2 + 26046 0.67 0.400501
Target:  5'- cUCGCC-UGCCGUGGgG-ACCGGaCUCa -3'
miRNA:   3'- uAGCGGaAUGGCGUCgUgUGGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 29074 0.67 0.382333
Target:  5'- cUCGCCgagACCGCgAGC-UACC-GCUCg -3'
miRNA:   3'- uAGCGGaa-UGGCG-UCGuGUGGcCGAG- -5'
26262 5' -58.5 NC_005345.2 + 45767 0.68 0.364723
Target:  5'- cUCGCC--GCCGUGGCACACguaucGCUCu -3'
miRNA:   3'- uAGCGGaaUGGCGUCGUGUGgc---CGAG- -5'
26262 5' -58.5 NC_005345.2 + 24569 0.68 0.347681
Target:  5'- cGUCGCCggcCUGCGGUACGCguaCGGCg- -3'
miRNA:   3'- -UAGCGGaauGGCGUCGUGUG---GCCGag -5'
26262 5' -58.5 NC_005345.2 + 16244 0.68 0.346844
Target:  5'- gAUCGaCCggcCCGCAGCGCccccagccugcggGCCGGuCUCc -3'
miRNA:   3'- -UAGC-GGaauGGCGUCGUG-------------UGGCC-GAG- -5'
26262 5' -58.5 NC_005345.2 + 7718 0.69 0.315331
Target:  5'- -cCGCCgguacgagcUGCCGCugcuGCAgGaCCGGCUCg -3'
miRNA:   3'- uaGCGGa--------AUGGCGu---CGUgU-GGCCGAG- -5'
26262 5' -58.5 NC_005345.2 + 9402 0.69 0.307608
Target:  5'- --aGCC-UGCCGCAgGCGCagcgggACCGGCUg -3'
miRNA:   3'- uagCGGaAUGGCGU-CGUG------UGGCCGAg -5'
26262 5' -58.5 NC_005345.2 + 43032 0.7 0.264303
Target:  5'- cGUCGUCggcgGCCGCAcCuACGCgCGGCUCg -3'
miRNA:   3'- -UAGCGGaa--UGGCGUcG-UGUG-GCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.