miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26263 3' -59.5 NC_005345.2 + 42694 1.11 0.000297
Target:  5'- cGGCGGCCCGCUCGAUGUACGUCCGCGa -3'
miRNA:   3'- -CCGCCGGGCGAGCUACAUGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 3623 0.77 0.097446
Target:  5'- -aCGGCCCGCgccgcaGGUGUGcCGUCCGCa -3'
miRNA:   3'- ccGCCGGGCGag----CUACAU-GCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 46035 0.77 0.100158
Target:  5'- gGGCGGCCC-CUCG--GUAUGUCCGgGg -3'
miRNA:   3'- -CCGCCGGGcGAGCuaCAUGCAGGCgC- -5'
26263 3' -59.5 NC_005345.2 + 4368 0.74 0.150308
Target:  5'- gGGCGGgCCGCUCGGUGgggguguCGgucaCCGUGa -3'
miRNA:   3'- -CCGCCgGGCGAGCUACau-----GCa---GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 14638 0.74 0.167119
Target:  5'- cGCGGCCCGcCUCGAcc-GCGUCCuCGg -3'
miRNA:   3'- cCGCCGGGC-GAGCUacaUGCAGGcGC- -5'
26263 3' -59.5 NC_005345.2 + 30931 0.73 0.180815
Target:  5'- cGGCGG-CCGCUcaCGGUGcACGgCCGCGa -3'
miRNA:   3'- -CCGCCgGGCGA--GCUACaUGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 35827 0.73 0.185597
Target:  5'- -uCGGCCCGCUCGGUGgg-GUUCGgGg -3'
miRNA:   3'- ccGCCGGGCGAGCUACaugCAGGCgC- -5'
26263 3' -59.5 NC_005345.2 + 14604 0.73 0.195496
Target:  5'- aGCGGCuCCGgaUCGAcggGUACGcCCGCGa -3'
miRNA:   3'- cCGCCG-GGCg-AGCUa--CAUGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 32737 0.72 0.205854
Target:  5'- cGGCgugGGCCCGCUugcucacagCGGUGUACGagCCGaCGa -3'
miRNA:   3'- -CCG---CCGGGCGA---------GCUACAUGCa-GGC-GC- -5'
26263 3' -59.5 NC_005345.2 + 37443 0.72 0.205854
Target:  5'- cGGCGGCCCGCuggUCGGccGU-CGaUCCGCc -3'
miRNA:   3'- -CCGCCGGGCG---AGCUa-CAuGC-AGGCGc -5'
26263 3' -59.5 NC_005345.2 + 33440 0.72 0.227996
Target:  5'- gGGCGGCCCGCaaGGUGUgucACcacCUGCGg -3'
miRNA:   3'- -CCGCCGGGCGagCUACA---UGca-GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 17369 0.71 0.233838
Target:  5'- uGGUcgGGCUCGUacUCGGUGc-CGUCCGCGg -3'
miRNA:   3'- -CCG--CCGGGCG--AGCUACauGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 9044 0.71 0.252121
Target:  5'- cGGCGaccGCCgGCUCG-UGcAgGUCCGCGa -3'
miRNA:   3'- -CCGC---CGGgCGAGCuACaUgCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 7500 0.71 0.258471
Target:  5'- uGGCGGgCCGCcauUCGGUGgGCGUgCUGCc -3'
miRNA:   3'- -CCGCCgGGCG---AGCUACaUGCA-GGCGc -5'
26263 3' -59.5 NC_005345.2 + 39483 0.71 0.258471
Target:  5'- cGGCGGC--GCUCGcgGUACGUcagcCCGCc -3'
miRNA:   3'- -CCGCCGggCGAGCuaCAUGCA----GGCGc -5'
26263 3' -59.5 NC_005345.2 + 43979 0.71 0.258471
Target:  5'- cGGCGGCUCGCcCGAcucGU-CGgccgCCGCGg -3'
miRNA:   3'- -CCGCCGGGCGaGCUa--CAuGCa---GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 10733 0.71 0.258471
Target:  5'- cGGaUGGCCgCGCUCGAUGU-CGU-CGCc -3'
miRNA:   3'- -CC-GCCGG-GCGAGCUACAuGCAgGCGc -5'
26263 3' -59.5 NC_005345.2 + 30371 0.7 0.285184
Target:  5'- cGGCaGCCCGCggcgggcgcaggUCGAggcGUaccucgacgacGCGUCCGCGc -3'
miRNA:   3'- -CCGcCGGGCG------------AGCUa--CA-----------UGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 2483 0.7 0.292194
Target:  5'- cGCGaGCgaGCUCGAUGUACacgCCGCu -3'
miRNA:   3'- cCGC-CGggCGAGCUACAUGca-GGCGc -5'
26263 3' -59.5 NC_005345.2 + 10803 0.7 0.306616
Target:  5'- aGGCGGaCCgGCUCGAUugGUGC--CUGCGg -3'
miRNA:   3'- -CCGCC-GGgCGAGCUA--CAUGcaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.