miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26263 3' -59.5 NC_005345.2 + 18154 0.67 0.460106
Target:  5'- cGGCGucggguacaGCCUcgGCUCGGUGUGggcguacacCGUCgGCGa -3'
miRNA:   3'- -CCGC---------CGGG--CGAGCUACAU---------GCAGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 34247 0.67 0.460106
Target:  5'- cGCGGCCCGCUuCGcccgcUGC-UCCGCc -3'
miRNA:   3'- cCGCCGGGCGA-GCuac--AUGcAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 39069 0.67 0.450532
Target:  5'- aGGCGGCgaucgaguggaCGCUCGccGcgACGUCgGCGu -3'
miRNA:   3'- -CCGCCGg----------GCGAGCuaCa-UGCAGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 16123 0.67 0.450532
Target:  5'- aGCGGCCgGC-CGGcg-GCGUCCcgGCGg -3'
miRNA:   3'- cCGCCGGgCGaGCUacaUGCAGG--CGC- -5'
26263 3' -59.5 NC_005345.2 + 37895 0.67 0.450532
Target:  5'- cGGCGguGCCCGUcacggccggagUCGA-GUcagcGCGUUCGCGg -3'
miRNA:   3'- -CCGC--CGGGCG-----------AGCUaCA----UGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 13797 0.67 0.44484
Target:  5'- cGGCGGCCCcgacacgccccugagGUacgUCGAca-GCGUCCGCc -3'
miRNA:   3'- -CCGCCGGG---------------CG---AGCUacaUGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 7108 0.67 0.441069
Target:  5'- -aCGGCCCGCgacGUGUgGCG-CCGCGc -3'
miRNA:   3'- ccGCCGGGCGagcUACA-UGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 7959 0.67 0.441069
Target:  5'- gGGCGGggauCCCG-UCGGUcgucgugucGUGcCGUCCGCGu -3'
miRNA:   3'- -CCGCC----GGGCgAGCUA---------CAU-GCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 15475 0.67 0.441069
Target:  5'- cGGCugacGCCgUGCUCGGUGcagAUGUCgGCGa -3'
miRNA:   3'- -CCGc---CGG-GCGAGCUACa--UGCAGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 48701 0.67 0.428937
Target:  5'- gGGCGGguaugcgccacggaCCCGCcCGuacUACGUCCGCc -3'
miRNA:   3'- -CCGCC--------------GGGCGaGCuacAUGCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 45470 0.67 0.423404
Target:  5'- cGGCGGCCggggugggcaugucgGCgaaggUGGUGggggccGCGUCCGCGa -3'
miRNA:   3'- -CCGCCGGg--------------CGa----GCUACa-----UGCAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 5771 0.67 0.422486
Target:  5'- aGGCGGUCCGCa-GGUcgGCGUaCGCGu -3'
miRNA:   3'- -CCGCCGGGCGagCUAcaUGCAgGCGC- -5'
26263 3' -59.5 NC_005345.2 + 19390 0.67 0.422486
Target:  5'- cGGCGGCgUGCccacccgCGggGUGC-UCCGUGa -3'
miRNA:   3'- -CCGCCGgGCGa------GCuaCAUGcAGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 43645 0.67 0.422486
Target:  5'- cGCGGuaguagcgacCCCGCUCGGU-UGCGaCCGCc -3'
miRNA:   3'- cCGCC----------GGGCGAGCUAcAUGCaGGCGc -5'
26263 3' -59.5 NC_005345.2 + 9302 0.67 0.413374
Target:  5'- cGCGGCCgGCgUUGA-GUuCGUCgGCGa -3'
miRNA:   3'- cCGCCGGgCG-AGCUaCAuGCAGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 18897 0.67 0.413374
Target:  5'- -cCGGCCUGCUCG----GCGgCCGCGa -3'
miRNA:   3'- ccGCCGGGCGAGCuacaUGCaGGCGC- -5'
26263 3' -59.5 NC_005345.2 + 34389 0.68 0.404383
Target:  5'- cGGCGGUcuCCGCgcugggcaaGGUGgGCGgcgCCGCGg -3'
miRNA:   3'- -CCGCCG--GGCGag-------CUACaUGCa--GGCGC- -5'
26263 3' -59.5 NC_005345.2 + 2678 0.68 0.395516
Target:  5'- cGGCGaGgCCGCgggcguugUCGAUGUGggUGUCgGCGg -3'
miRNA:   3'- -CCGC-CgGGCG--------AGCUACAU--GCAGgCGC- -5'
26263 3' -59.5 NC_005345.2 + 8703 0.68 0.386777
Target:  5'- gGGCGGCCCgGCU--GUGgccgacuCGUCCGUc -3'
miRNA:   3'- -CCGCCGGG-CGAgcUACau-----GCAGGCGc -5'
26263 3' -59.5 NC_005345.2 + 6468 0.68 0.378165
Target:  5'- aGCGGgCCGC-CGAgcUGUACGgCgGCGa -3'
miRNA:   3'- cCGCCgGGCGaGCU--ACAUGCaGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.