miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26263 5' -56 NC_005345.2 + 885 0.66 0.706417
Target:  5'- cGCAGGGaacgGCGUCUCgauauagcuccGGGUCccgcagaucGACCGGc -3'
miRNA:   3'- uCGUCCU----UGCAGAG-----------CCUAGc--------CUGGCC- -5'
26263 5' -56 NC_005345.2 + 14859 0.66 0.706417
Target:  5'- uGCAGcGGGCGcUCgacgCGGccgaggcgaGUCGGGCCGa -3'
miRNA:   3'- uCGUC-CUUGC-AGa---GCC---------UAGCCUGGCc -5'
26263 5' -56 NC_005345.2 + 36815 0.66 0.706417
Target:  5'- uGC-GGAGCGUCUUGcagggacgaccGAUCGGcGCCGc -3'
miRNA:   3'- uCGuCCUUGCAGAGC-----------CUAGCC-UGGCc -5'
26263 5' -56 NC_005345.2 + 43108 0.66 0.703223
Target:  5'- cGGUccuGGGGCGUCcCGGAcCGGuggcccaacggccgGCCGGa -3'
miRNA:   3'- -UCGu--CCUUGCAGaGCCUaGCC--------------UGGCC- -5'
26263 5' -56 NC_005345.2 + 39413 0.66 0.695749
Target:  5'- -cCGGGAGCGUCggCGcGGUCGcGGCCc- -3'
miRNA:   3'- ucGUCCUUGCAGa-GC-CUAGC-CUGGcc -5'
26263 5' -56 NC_005345.2 + 38251 0.66 0.695749
Target:  5'- uGCAGGcgugaucgauGACGUg-CGGGUgCGGGCaCGGg -3'
miRNA:   3'- uCGUCC----------UUGCAgaGCCUA-GCCUG-GCC- -5'
26263 5' -56 NC_005345.2 + 30234 0.66 0.695749
Target:  5'- cGGCGGuGAGCcgGUCgacgacggugCGGGUCcGGCCGGu -3'
miRNA:   3'- -UCGUC-CUUG--CAGa---------GCCUAGcCUGGCC- -5'
26263 5' -56 NC_005345.2 + 29548 0.66 0.695749
Target:  5'- -uCGGGGGCGUCgUCGuccuGGUCGuGAUCGGu -3'
miRNA:   3'- ucGUCCUUGCAG-AGC----CUAGC-CUGGCC- -5'
26263 5' -56 NC_005345.2 + 33693 0.66 0.695749
Target:  5'- aAGCAGGcgaAGCGgCUCGGGgccgucgCGGGCgaGGu -3'
miRNA:   3'- -UCGUCC---UUGCaGAGCCUa------GCCUGg-CC- -5'
26263 5' -56 NC_005345.2 + 10638 0.66 0.695749
Target:  5'- gAGCAGcacGCGUgaCUCaGGGaccgCGGACCGGu -3'
miRNA:   3'- -UCGUCcu-UGCA--GAG-CCUa---GCCUGGCC- -5'
26263 5' -56 NC_005345.2 + 28412 0.66 0.68502
Target:  5'- cGGCAGGcAgGg--CGGAUCGGucGCCGa -3'
miRNA:   3'- -UCGUCCuUgCagaGCCUAGCC--UGGCc -5'
26263 5' -56 NC_005345.2 + 48550 0.66 0.68502
Target:  5'- uGGuCAGGAugcggGCGUCgCGGAUgCGGgcGCCGa -3'
miRNA:   3'- -UC-GUCCU-----UGCAGaGCCUA-GCC--UGGCc -5'
26263 5' -56 NC_005345.2 + 42958 0.66 0.68502
Target:  5'- gGGCGccgcGGAACG-CgCGGAacugcgcCGGGCCGGa -3'
miRNA:   3'- -UCGU----CCUUGCaGaGCCUa------GCCUGGCC- -5'
26263 5' -56 NC_005345.2 + 35941 0.66 0.683944
Target:  5'- cGCGGGGugugcuCGcCgcgCGGGcugccgcUCGGGCCGGu -3'
miRNA:   3'- uCGUCCUu-----GCaGa--GCCU-------AGCCUGGCC- -5'
26263 5' -56 NC_005345.2 + 37642 0.66 0.674242
Target:  5'- gAGCGGcuGCaGUC-CGGcGUCGGugCGGg -3'
miRNA:   3'- -UCGUCcuUG-CAGaGCC-UAGCCugGCC- -5'
26263 5' -56 NC_005345.2 + 12620 0.66 0.674242
Target:  5'- cGGcCGGGcACGgCUCGGGcaccgggccUCGGAgCGGg -3'
miRNA:   3'- -UC-GUCCuUGCaGAGCCU---------AGCCUgGCC- -5'
26263 5' -56 NC_005345.2 + 5270 0.66 0.674242
Target:  5'- cGGCAGG-GCGggCUCGGGggUCGGguacuGCgGGg -3'
miRNA:   3'- -UCGUCCuUGCa-GAGCCU--AGCC-----UGgCC- -5'
26263 5' -56 NC_005345.2 + 46028 0.66 0.663425
Target:  5'- uGCAGuGGCGcCUCGGcgCGaaguauGGCCGGa -3'
miRNA:   3'- uCGUCcUUGCaGAGCCuaGC------CUGGCC- -5'
26263 5' -56 NC_005345.2 + 46003 0.66 0.663425
Target:  5'- uGGCGGGcccuCGgggucgCUCcGGUCGGACgGGg -3'
miRNA:   3'- -UCGUCCuu--GCa-----GAGcCUAGCCUGgCC- -5'
26263 5' -56 NC_005345.2 + 11666 0.66 0.655836
Target:  5'- cGGCGGGAACGUCguaccgcUcgcccgcgcugcaggCGGAUCGacGGCCGa -3'
miRNA:   3'- -UCGUCCUUGCAG-------A---------------GCCUAGC--CUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.