miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26264 3' -54.4 NC_005345.2 + 21991 0.67 0.656447
Target:  5'- cGGCGGGAcgccgcgcagcgccUCGG--GCAGCUCGaCGccGGCc -3'
miRNA:   3'- -CCGUCCU--------------AGCUcaUGUCGAGC-GC--UCG- -5'
26264 3' -54.4 NC_005345.2 + 34743 0.68 0.65312
Target:  5'- cGGCAGGcGUCGGcgacGUGCAGCcggaUCGgcaccggccggucgcCGAGCu -3'
miRNA:   3'- -CCGUCC-UAGCU----CAUGUCG----AGC---------------GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 28264 0.68 0.64868
Target:  5'- gGGCAG---UGAGUGCgcuuugcgGGCUCGCGcGCu -3'
miRNA:   3'- -CCGUCcuaGCUCAUG--------UCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 5663 0.68 0.64868
Target:  5'- uGGCGGcGAUCGAGgucACcuguGCgUCgGUGAGCg -3'
miRNA:   3'- -CCGUC-CUAGCUCa--UGu---CG-AG-CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 37910 0.68 0.637572
Target:  5'- cGGCcGGAgUCGAGU-CAGCgcguUCGCGGacGCc -3'
miRNA:   3'- -CCGuCCU-AGCUCAuGUCG----AGCGCU--CG- -5'
26264 3' -54.4 NC_005345.2 + 44132 0.68 0.637572
Target:  5'- uGGCuguGGAUCGuaUGCgGGCUCgucaccaugGCGAGCg -3'
miRNA:   3'- -CCGu--CCUAGCucAUG-UCGAG---------CGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 12444 0.68 0.637572
Target:  5'- cGCGGGcuaccUCGc--GCAGCUCGCGGGg -3'
miRNA:   3'- cCGUCCu----AGCucaUGUCGAGCGCUCg -5'
26264 3' -54.4 NC_005345.2 + 28747 0.68 0.637572
Target:  5'- cGGCGGGAgguacggCGGGgcCGGCUCgGUGAc- -3'
miRNA:   3'- -CCGUCCUa------GCUCauGUCGAG-CGCUcg -5'
26264 3' -54.4 NC_005345.2 + 44041 0.68 0.637572
Target:  5'- cGUAGGAgggcaUCGGGaUGCcgcGCUCGCG-GCg -3'
miRNA:   3'- cCGUCCU-----AGCUC-AUGu--CGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 40759 0.68 0.626459
Target:  5'- cGGCAGcGGcucgUCGGGccgguCGGCcggCGCGGGCg -3'
miRNA:   3'- -CCGUC-CU----AGCUCau---GUCGa--GCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 15441 0.68 0.615351
Target:  5'- aGCGGGGUCGGcacggaguuuGUGCAGCgucUGCcGGCu -3'
miRNA:   3'- cCGUCCUAGCU----------CAUGUCGa--GCGcUCG- -5'
26264 3' -54.4 NC_005345.2 + 41541 0.68 0.61424
Target:  5'- cGGCGaccuGGUCGAcgacgucGUGCGcgcgcucgccguGCUCGCGGGCg -3'
miRNA:   3'- -CCGUc---CUAGCU-------CAUGU------------CGAGCGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 24103 0.68 0.608692
Target:  5'- cGCGGGGUCGGcGUACAuGCccacgacgucguacgUCGCGAacGCc -3'
miRNA:   3'- cCGUCCUAGCU-CAUGU-CG---------------AGCGCU--CG- -5'
26264 3' -54.4 NC_005345.2 + 21632 0.68 0.604257
Target:  5'- gGGCGGGAgaUCGAuccucaGCGGCUCggGCGGGg -3'
miRNA:   3'- -CCGUCCU--AGCUca----UGUCGAG--CGCUCg -5'
26264 3' -54.4 NC_005345.2 + 4123 0.68 0.604257
Target:  5'- cGGUuGGcguUCGAGcgGCuGCUCGCG-GCg -3'
miRNA:   3'- -CCGuCCu--AGCUCa-UGuCGAGCGCuCG- -5'
26264 3' -54.4 NC_005345.2 + 1940 0.68 0.603149
Target:  5'- gGGCGGGugcgaaugcacguGUcCGGGUcCGGCUC-CGGGCa -3'
miRNA:   3'- -CCGUCC-------------UA-GCUCAuGUCGAGcGCUCG- -5'
26264 3' -54.4 NC_005345.2 + 8070 0.68 0.603149
Target:  5'- aGCcuGGUCGuGUACAGCggacgacagcuguUCGgCGAGCa -3'
miRNA:   3'- cCGucCUAGCuCAUGUCG-------------AGC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 36260 0.68 0.593189
Target:  5'- cGCGGcGAUCGAGgcgaGCGGCcacccggCGgCGAGCc -3'
miRNA:   3'- cCGUC-CUAGCUCa---UGUCGa------GC-GCUCG- -5'
26264 3' -54.4 NC_005345.2 + 16866 0.68 0.593189
Target:  5'- uGCAGGcgCG-GUACGGCcgaGCGuGGCg -3'
miRNA:   3'- cCGUCCuaGCuCAUGUCGag-CGC-UCG- -5'
26264 3' -54.4 NC_005345.2 + 14606 0.69 0.571161
Target:  5'- cGGCuccGGAUCGAcggGUAC-GCcCGCGAGg -3'
miRNA:   3'- -CCGu--CCUAGCU---CAUGuCGaGCGCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.