miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26266 3' -57.9 NC_005345.2 + 26875 0.67 0.503028
Target:  5'- cCCGG-CC-GcCUCGACGaUCcgcuGCGCCCa -3'
miRNA:   3'- -GGCCaGGaC-GAGCUGC-AGu---UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 23510 0.67 0.503028
Target:  5'- aCUGGcaguUCCUGCUCGACac---CGCCCu -3'
miRNA:   3'- -GGCC----AGGACGAGCUGcaguuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 9097 0.68 0.492957
Target:  5'- aCGGUCCccGCUgUGugGUCGAgcUGCUCGa -3'
miRNA:   3'- gGCCAGGa-CGA-GCugCAGUU--GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 3716 0.68 0.492957
Target:  5'- gCCGGggggugCCUGC--GACGUCGACGaCgCGg -3'
miRNA:   3'- -GGCCa-----GGACGagCUGCAGUUGC-GgGC- -5'
26266 3' -57.9 NC_005345.2 + 42696 0.68 0.492957
Target:  5'- gCGG-CCcGCUCGAUGU--ACGUCCGc -3'
miRNA:   3'- gGCCaGGaCGAGCUGCAguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 35421 0.68 0.48298
Target:  5'- gUCGucGUCCgGUUCGGCGUCGGgGUCCc -3'
miRNA:   3'- -GGC--CAGGaCGAGCUGCAGUUgCGGGc -5'
26266 3' -57.9 NC_005345.2 + 9176 0.68 0.48298
Target:  5'- gCCGGUCgUGUgCGAgcUGaUCGACGCCgGg -3'
miRNA:   3'- -GGCCAGgACGaGCU--GC-AGUUGCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 4523 0.68 0.48298
Target:  5'- uCCGGUCUgcCUCGACGagGggcACGaCCCGg -3'
miRNA:   3'- -GGCCAGGacGAGCUGCagU---UGC-GGGC- -5'
26266 3' -57.9 NC_005345.2 + 27131 0.68 0.48298
Target:  5'- gCGGcaCCgGC-CGGCGUCGAgcUGCCCGa -3'
miRNA:   3'- gGCCa-GGaCGaGCUGCAGUU--GCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 23546 0.68 0.48298
Target:  5'- -aGGaacgCCUGCUCGGCGuucuUCGGCaGCaCCGg -3'
miRNA:   3'- ggCCa---GGACGAGCUGC----AGUUG-CG-GGC- -5'
26266 3' -57.9 NC_005345.2 + 35084 0.68 0.473102
Target:  5'- -aGGUCUUGUUCGcgauCGUCGugGUCgCGg -3'
miRNA:   3'- ggCCAGGACGAGCu---GCAGUugCGG-GC- -5'
26266 3' -57.9 NC_005345.2 + 32196 0.68 0.473102
Target:  5'- cCUGGUCgUGUUCGGgcuCGUCAACccggGCUCGu -3'
miRNA:   3'- -GGCCAGgACGAGCU---GCAGUUG----CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 38391 0.68 0.463326
Target:  5'- aCGG-CCggcagggGCUCGGCGUCGGCGa-CGa -3'
miRNA:   3'- gGCCaGGa------CGAGCUGCAGUUGCggGC- -5'
26266 3' -57.9 NC_005345.2 + 18541 0.68 0.463326
Target:  5'- aCCGGUgggCUGCUCGggGCGcUCGccgggugcGCGCCCa -3'
miRNA:   3'- -GGCCAg--GACGAGC--UGC-AGU--------UGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 19263 0.68 0.453657
Target:  5'- aCCGGgugcaCCUG-UCGAcCGUCcuCGCCCa -3'
miRNA:   3'- -GGCCa----GGACgAGCU-GCAGuuGCGGGc -5'
26266 3' -57.9 NC_005345.2 + 37707 0.68 0.451736
Target:  5'- gCCaGUCCUGCgggaucgcgcugCGGCG-CGGCGCCgGc -3'
miRNA:   3'- -GGcCAGGACGa-----------GCUGCaGUUGCGGgC- -5'
26266 3' -57.9 NC_005345.2 + 13159 0.68 0.444099
Target:  5'- gCCGaGUCC-GCUCGGCGgaaggaCAACcgaugaccgGCCCGa -3'
miRNA:   3'- -GGC-CAGGaCGAGCUGCa-----GUUG---------CGGGC- -5'
26266 3' -57.9 NC_005345.2 + 20523 0.69 0.434655
Target:  5'- cCCGGgaucggCCUGCggCGAC----ACGCCCGg -3'
miRNA:   3'- -GGCCa-----GGACGa-GCUGcaguUGCGGGC- -5'
26266 3' -57.9 NC_005345.2 + 26289 0.69 0.425328
Target:  5'- aCGGcgCCcGCUCGuCGUCGACaCCCu -3'
miRNA:   3'- gGCCa-GGaCGAGCuGCAGUUGcGGGc -5'
26266 3' -57.9 NC_005345.2 + 20286 0.69 0.425328
Target:  5'- aCCGGaUCgUGCcggCGACGUCGgucuuaccggccGCGUCCa -3'
miRNA:   3'- -GGCC-AGgACGa--GCUGCAGU------------UGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.