Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26266 | 5' | -55.6 | NC_005345.2 | + | 11378 | 0.68 | 0.529856 |
Target: 5'- -cCGGuCGCGGCCGccUGCGGGCg---- -3' miRNA: 3'- caGCUuGCGCUGGU--ACGCCCGgaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 21837 | 0.68 | 0.529856 |
Target: 5'- aUCGAcugcuGCGCGGCaugCGUGCGGGCg---- -3' miRNA: 3'- cAGCU-----UGCGCUG---GUACGCCCGgaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 27123 | 0.68 | 0.529856 |
Target: 5'- cUCGGcCGgGACCGUccgGCGGGCCc--- -3' miRNA: 3'- cAGCUuGCgCUGGUA---CGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 11266 | 0.68 | 0.487386 |
Target: 5'- -aCGGGCaccgccGCGACCGUcCGGGCCUg-- -3' miRNA: 3'- caGCUUG------CGCUGGUAcGCCCGGAaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 2371 | 0.69 | 0.477017 |
Target: 5'- -cCGGuCGCGACCucGCGGGCCc--- -3' miRNA: 3'- caGCUuGCGCUGGuaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 18146 | 0.69 | 0.466758 |
Target: 5'- gGUCGGcACGUaggccgGACCggGCGGGCCg--- -3' miRNA: 3'- -CAGCU-UGCG------CUGGuaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 24748 | 0.69 | 0.446591 |
Target: 5'- cGUCGGACGCGuggcugucgcaGCCcgaaGUGCGGGCg---- -3' miRNA: 3'- -CAGCUUGCGC-----------UGG----UACGCCCGgaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 18209 | 0.69 | 0.446591 |
Target: 5'- -cCGGuCGCGGCCGUgcaccgugaGCGGGCCg--- -3' miRNA: 3'- caGCUuGCGCUGGUA---------CGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 42803 | 0.69 | 0.446591 |
Target: 5'- -gCGGAUGCGGCCAaGuUGGGCCg--- -3' miRNA: 3'- caGCUUGCGCUGGUaC-GCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 3425 | 0.69 | 0.446591 |
Target: 5'- -gCGGGCGCGGCgGcgggcggcgaUGCGGGCCc--- -3' miRNA: 3'- caGCUUGCGCUGgU----------ACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 23672 | 0.69 | 0.436691 |
Target: 5'- --aGGGuCGCGGCCGgucggGCGGGCCg--- -3' miRNA: 3'- cagCUU-GCGCUGGUa----CGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 515 | 0.69 | 0.436691 |
Target: 5'- gGUCaGGACGCcGCCcUGUGGGCCg--- -3' miRNA: 3'- -CAG-CUUGCGcUGGuACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 2445 | 0.69 | 0.436691 |
Target: 5'- cUCGAACGCGuCCcgGUGuaGGCCUg-- -3' miRNA: 3'- cAGCUUGCGCuGGuaCGC--CCGGAaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 11705 | 0.69 | 0.426918 |
Target: 5'- aUCGAcgGC-CGACCA-GCGGGCCg--- -3' miRNA: 3'- cAGCU--UGcGCUGGUaCGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 44760 | 0.7 | 0.380075 |
Target: 5'- uGUCGAuCGCGcUCAUGCGGcGCCg--- -3' miRNA: 3'- -CAGCUuGCGCuGGUACGCC-CGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 38423 | 0.71 | 0.34516 |
Target: 5'- aUCGAGCGCGGCCAU-CcGGCCg--- -3' miRNA: 3'- cAGCUUGCGCUGGUAcGcCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 29317 | 0.73 | 0.254621 |
Target: 5'- -gUGAACGCGACCGUGCcGGUCa--- -3' miRNA: 3'- caGCUUGCGCUGGUACGcCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 24616 | 0.74 | 0.240939 |
Target: 5'- -aCGggUGCGugcugcacgauccGCCGUGCGGGCCg--- -3' miRNA: 3'- caGCuuGCGC-------------UGGUACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 19078 | 0.79 | 0.108117 |
Target: 5'- gGUCu-ACGCGAUCGUGCGGGCCg--- -3' miRNA: 3'- -CAGcuUGCGCUGGUACGCCCGGaaua -5' |
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26266 | 5' | -55.6 | NC_005345.2 | + | 2036 | 0.82 | 0.065938 |
Target: 5'- cGUCGAgcgggcccgGCGCGGCCcgGCGGGCCg--- -3' miRNA: 3'- -CAGCU---------UGCGCUGGuaCGCCCGGaaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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