miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26267 3' -54.9 NC_005345.2 + 36945 0.67 0.669267
Target:  5'- aGGcgGcGGCCGGAcagCGGCaGaCGGCCGCu -3'
miRNA:   3'- -CCaaC-UUGGCCUa--GCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 30685 0.66 0.702105
Target:  5'- gGGUcGAcgauCCGGc-CGGCUGCggguGGCCGCg -3'
miRNA:   3'- -CCAaCUu---GGCCuaGCUGACG----CCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 22258 0.66 0.71185
Target:  5'- aGGUgcugccgUGGGCgcagCGGAUCGuCgagGCGGCCGg -3'
miRNA:   3'- -CCA-------ACUUG----GCCUAGCuGa--CGCCGGUg -5'
26267 3' -54.9 NC_005345.2 + 13633 0.66 0.723671
Target:  5'- ---gGAACCGGA-CGGC-GCGGCgugaGCg -3'
miRNA:   3'- ccaaCUUGGCCUaGCUGaCGCCGg---UG- -5'
26267 3' -54.9 NC_005345.2 + 19106 0.66 0.727944
Target:  5'- uGGcUGAugUGGGcgcucaccgcauggUGGCUGCGGgCCGCa -3'
miRNA:   3'- -CCaACUugGCCUa-------------GCUGACGCC-GGUG- -5'
26267 3' -54.9 NC_005345.2 + 7744 0.67 0.625036
Target:  5'- ---aGGACCGGcUCGACgGCacGCCGCu -3'
miRNA:   3'- ccaaCUUGGCCuAGCUGaCGc-CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 35958 0.68 0.609546
Target:  5'- --aUGAGCgGGGUUGACUuccugucggacccCGGCCGCa -3'
miRNA:   3'- ccaACUUGgCCUAGCUGAc------------GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 36769 0.73 0.304592
Target:  5'- cGUUG-ACCGGGUCGGCgucgGCGaucggcacaGCCGCa -3'
miRNA:   3'- cCAACuUGGCCUAGCUGa---CGC---------CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 951 0.73 0.30995
Target:  5'- gGGUUGAACgGGAuacgccggccguccUUGACgGCGGCC-Cg -3'
miRNA:   3'- -CCAACUUGgCCU--------------AGCUGaCGCCGGuG- -5'
26267 3' -54.9 NC_005345.2 + 27036 0.71 0.415641
Target:  5'- gGGUcGuGCCGG-UCG-UUGUGGCCACg -3'
miRNA:   3'- -CCAaCuUGGCCuAGCuGACGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 20503 0.71 0.424199
Target:  5'- cGGUcgGGGCUuuccgcugccccgGGAUCGGcCUGCGGCgACa -3'
miRNA:   3'- -CCAa-CUUGG-------------CCUAGCU-GACGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 7453 0.7 0.454463
Target:  5'- ---aGGACCGGAUCguGACcGCGGCaGCg -3'
miRNA:   3'- ccaaCUUGGCCUAG--CUGaCGCCGgUG- -5'
26267 3' -54.9 NC_005345.2 + 14909 0.7 0.464473
Target:  5'- cGGgcGAAgCGGGccgCGGCgcgGCGGCUGCa -3'
miRNA:   3'- -CCaaCUUgGCCUa--GCUGa--CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 40756 0.7 0.464473
Target:  5'- gGGgcGGACCGu-UCGGCcGcCGGCCGCg -3'
miRNA:   3'- -CCaaCUUGGCcuAGCUGaC-GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 2641 0.7 0.495166
Target:  5'- cGGacuGACCGGGUCaaaGCUcgcaGCGGCCACg -3'
miRNA:   3'- -CCaacUUGGCCUAGc--UGA----CGCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 36258 0.7 0.495166
Target:  5'- cGGaUGAACCaGGAgagCGGCggcaaccCGGCCGCg -3'
miRNA:   3'- -CCaACUUGG-CCUa--GCUGac-----GCCGGUG- -5'
26267 3' -54.9 NC_005345.2 + 1331 0.68 0.5809
Target:  5'- uGGUUGccGGCCGGGUCG-CgguaacGCGccuGCCACg -3'
miRNA:   3'- -CCAAC--UUGGCCUAGCuGa-----CGC---CGGUG- -5'
26267 3' -54.9 NC_005345.2 + 9166 0.68 0.591891
Target:  5'- gGGUgcacGGGCCGG-UCGugUGCGaGCUg- -3'
miRNA:   3'- -CCAa---CUUGGCCuAGCugACGC-CGGug -5'
26267 3' -54.9 NC_005345.2 + 24650 0.68 0.602917
Target:  5'- gGGUUGGucGCC-GAUCGA--GCGGCuCACg -3'
miRNA:   3'- -CCAACU--UGGcCUAGCUgaCGCCG-GUG- -5'
26267 3' -54.9 NC_005345.2 + 18585 0.68 0.602917
Target:  5'- cGGgaacaccGCCGGGUCGAaaGCGGUCGg -3'
miRNA:   3'- -CCaacu---UGGCCUAGCUgaCGCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.