miRNA display CGI


Results 41 - 60 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 3' -60.8 NC_005345.2 + 32175 0.68 0.292373
Target:  5'- aCGaCGGGCacGGCAGC-CGGCcGAGGUGc -3'
miRNA:   3'- cGCcGCUCG--UCGUCGuGCCG-CUCCAU- -5'
26268 3' -60.8 NC_005345.2 + 14595 0.68 0.292373
Target:  5'- gGCGGCaccuuuuccAGCAGCAGCGCcccgaccuucGCGAGGa- -3'
miRNA:   3'- -CGCCGc--------UCGUCGUCGUGc---------CGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 37479 0.68 0.287365
Target:  5'- cGCgGGCGAGCGGUacgacguucccgccgGGCgcgggcuGCGGCGcGGUGc -3'
miRNA:   3'- -CG-CCGCUCGUCG---------------UCG-------UGCCGCuCCAU- -5'
26268 3' -60.8 NC_005345.2 + 48411 0.68 0.285239
Target:  5'- aGCaccGCGAGCGGCAcGUcgACGGCGuGGg- -3'
miRNA:   3'- -CGc--CGCUCGUCGU-CG--UGCCGCuCCau -5'
26268 3' -60.8 NC_005345.2 + 45332 0.68 0.278243
Target:  5'- cCGGCGAGCuGCuGCGCGGCc----- -3'
miRNA:   3'- cGCCGCUCGuCGuCGUGCCGcuccau -5'
26268 3' -60.8 NC_005345.2 + 38599 0.68 0.278243
Target:  5'- cGUGGCGAGCGccuCGGaCACGGCGAu--- -3'
miRNA:   3'- -CGCCGCUCGUc--GUC-GUGCCGCUccau -5'
26268 3' -60.8 NC_005345.2 + 6696 0.68 0.278243
Target:  5'- aCGGCGAGgGGUGGCAcgagcagcCGGCGGgcacGGUGu -3'
miRNA:   3'- cGCCGCUCgUCGUCGU--------GCCGCU----CCAU- -5'
26268 3' -60.8 NC_005345.2 + 4364 0.68 0.271385
Target:  5'- -gGGCGGGCgGGCcGCuCGGUGGGGg- -3'
miRNA:   3'- cgCCGCUCG-UCGuCGuGCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 30702 0.68 0.271385
Target:  5'- gGCuGCGGGUGGCcGCGgugauCGGCGAGGa- -3'
miRNA:   3'- -CGcCGCUCGUCGuCGU-----GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 31279 0.68 0.271385
Target:  5'- uGCGG-GGGCGGguGCGCGccaCGGGGg- -3'
miRNA:   3'- -CGCCgCUCGUCguCGUGCc--GCUCCau -5'
26268 3' -60.8 NC_005345.2 + 30069 0.68 0.271385
Target:  5'- aCGGCGAGCucaucGGCgAGCACGGCcccGAGa-- -3'
miRNA:   3'- cGCCGCUCG-----UCG-UCGUGCCG---CUCcau -5'
26268 3' -60.8 NC_005345.2 + 18852 0.68 0.264663
Target:  5'- gGCaGGCGAGCAGguGCgggccgcgaucgACaGCGcAGGUGu -3'
miRNA:   3'- -CG-CCGCUCGUCguCG------------UGcCGC-UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 36345 0.68 0.264663
Target:  5'- cCGGCGGGCcgAGCGGCucgGGCG-GGUc -3'
miRNA:   3'- cGCCGCUCG--UCGUCGug-CCGCuCCAu -5'
26268 3' -60.8 NC_005345.2 + 3056 0.68 0.264663
Target:  5'- gGCGGUGuggacGUAGCGGaucguguCGGCGAGGa- -3'
miRNA:   3'- -CGCCGCu----CGUCGUCgu-----GCCGCUCCau -5'
26268 3' -60.8 NC_005345.2 + 4190 0.68 0.264663
Target:  5'- gGCGGCaGGCcgugcaGGCGGCGCGGCaGAugcugcGGUAc -3'
miRNA:   3'- -CGCCGcUCG------UCGUCGUGCCG-CU------CCAU- -5'
26268 3' -60.8 NC_005345.2 + 44370 0.68 0.258077
Target:  5'- cGCGGCGAGCccGGaaaGGCACGGgcccaccaUGAcGGUAu -3'
miRNA:   3'- -CGCCGCUCG--UCg--UCGUGCC--------GCU-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 11600 0.69 0.251625
Target:  5'- gGUGGCGuGgGGCGGcCGCuGGCGGGaGUGg -3'
miRNA:   3'- -CGCCGCuCgUCGUC-GUG-CCGCUC-CAU- -5'
26268 3' -60.8 NC_005345.2 + 35873 0.69 0.251625
Target:  5'- cCGGCGAGCugccgguGCAGCgguucgccgACGGCGgcaucgucGGGUGg -3'
miRNA:   3'- cGCCGCUCGu------CGUCG---------UGCCGC--------UCCAU- -5'
26268 3' -60.8 NC_005345.2 + 21859 0.69 0.251625
Target:  5'- uGCgGGCGAGCuGCAGguCGGUcucGGUGa -3'
miRNA:   3'- -CG-CCGCUCGuCGUCguGCCGcu-CCAU- -5'
26268 3' -60.8 NC_005345.2 + 27803 0.69 0.251625
Target:  5'- uGUGGCGcaAGCcGC-GCACGGgCGAGGa- -3'
miRNA:   3'- -CGCCGC--UCGuCGuCGUGCC-GCUCCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.