Results 61 - 67 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 39277 | 0.73 | 0.190366 |
Target: 5'- cGGCGcGUCGgGACUGCucgaccgcguccugaUCACCUCUGACg -3' miRNA: 3'- -UCGU-CAGUgCUGACG---------------AGUGGGGGCUG- -5' |
|||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 14430 | 0.74 | 0.160181 |
Target: 5'- gGGCgaucgaGGUCGCGcuCUGCUCGCUCgCCGACu -3' miRNA: 3'- -UCG------UCAGUGCu-GACGAGUGGG-GGCUG- -5' |
|||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 3537 | 0.74 | 0.155874 |
Target: 5'- cGGCGGUgACG-CUGUgacgaUCACCCUCGACc -3' miRNA: 3'- -UCGUCAgUGCuGACG-----AGUGGGGGCUG- -5' |
|||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 8634 | 0.75 | 0.132168 |
Target: 5'- gAGCAGUCGUGACUGCUCucuCUCCCuACc -3' miRNA: 3'- -UCGUCAGUGCUGACGAGu--GGGGGcUG- -5' |
|||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 20609 | 0.75 | 0.132168 |
Target: 5'- gAGCcgAGcCACGACUGaucgUCGCCCCCGAa -3' miRNA: 3'- -UCG--UCaGUGCUGACg---AGUGGGGGCUg -5' |
|||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 29784 | 0.77 | 0.105722 |
Target: 5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3' miRNA: 3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5' |
|||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 40522 | 1.08 | 0.000455 |
Target: 5'- gAGCAGUCACGACUGCUCACCCCCGACc -3' miRNA: 3'- -UCGUCAGUGCUGACGAGUGGGGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home