miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 39277 0.73 0.190366
Target:  5'- cGGCGcGUCGgGACUGCucgaccgcguccugaUCACCUCUGACg -3'
miRNA:   3'- -UCGU-CAGUgCUGACG---------------AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 14430 0.74 0.160181
Target:  5'- gGGCgaucgaGGUCGCGcuCUGCUCGCUCgCCGACu -3'
miRNA:   3'- -UCG------UCAGUGCu-GACGAGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 3537 0.74 0.155874
Target:  5'- cGGCGGUgACG-CUGUgacgaUCACCCUCGACc -3'
miRNA:   3'- -UCGUCAgUGCuGACG-----AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 8634 0.75 0.132168
Target:  5'- gAGCAGUCGUGACUGCUCucuCUCCCuACc -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGu--GGGGGcUG- -5'
26268 5' -58.3 NC_005345.2 + 20609 0.75 0.132168
Target:  5'- gAGCcgAGcCACGACUGaucgUCGCCCCCGAa -3'
miRNA:   3'- -UCG--UCaGUGCUGACg---AGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 29784 0.77 0.105722
Target:  5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3'
miRNA:   3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 40522 1.08 0.000455
Target:  5'- gAGCAGUCACGACUGCUCACCCCCGACc -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGUGGGGGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.