Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 43406 | 0.67 | 0.456016 |
Target: 5'- cGCAGUCcuCGGCUGCg-GCCCggaacacggCCGGCc -3' miRNA: 3'- uCGUCAGu-GCUGACGagUGGG---------GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8919 | 0.67 | 0.456016 |
Target: 5'- cGCcaGGaUCACGGCgGC-CGCCCCCGuggGCg -3' miRNA: 3'- uCG--UC-AGUGCUGaCGaGUGGGGGC---UG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 31322 | 0.67 | 0.464928 |
Target: 5'- cGCGGUCugGAggGCggCcggacgugaccauGCCCCCGAUc -3' miRNA: 3'- uCGUCAGugCUgaCGa-G-------------UGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 16548 | 0.67 | 0.455032 |
Target: 5'- uGC-GUCACaccggguGGCUGCUCACCgUCgCGACg -3' miRNA: 3'- uCGuCAGUG-------CUGACGAGUGG-GG-GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 36436 | 0.67 | 0.427946 |
Target: 5'- uGCGGUacgcgcugucccgcUACGGCUcGCUCGCCucggccuacaaccgaCCCGGCg -3' miRNA: 3'- uCGUCA--------------GUGCUGA-CGAGUGG---------------GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 12651 | 0.67 | 0.426996 |
Target: 5'- gAGCGGgcgCACuGGCUGaacugCGCCCCCacGGCa -3' miRNA: 3'- -UCGUCa--GUG-CUGACga---GUGGGGG--CUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 36253 | 0.67 | 0.456016 |
Target: 5'- cGGCcGUCGCGGCgaucgagGCgagCgGCCaCCCGGCg -3' miRNA: 3'- -UCGuCAGUGCUGa------CGa--G-UGG-GGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 45421 | 0.67 | 0.436549 |
Target: 5'- aGGCGG-CGCGggcgaacgaucaGCUGCaccUCGCCgCCGGCg -3' miRNA: 3'- -UCGUCaGUGC------------UGACG---AGUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 2547 | 0.67 | 0.436549 |
Target: 5'- cGCGGUgGCGACgGCgagUGCCCggUCGACg -3' miRNA: 3'- uCGUCAgUGCUGaCGa--GUGGG--GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 30365 | 0.67 | 0.426996 |
Target: 5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3' miRNA: 3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 45639 | 0.67 | 0.426996 |
Target: 5'- cGCAGuucgcUCAUGACgucCUCGCCUgCGACg -3' miRNA: 3'- uCGUC-----AGUGCUGac-GAGUGGGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 41701 | 0.67 | 0.415698 |
Target: 5'- cGCGGUCACGAuccggucCUGCUCgacgucaACgCCCGuCg -3' miRNA: 3'- uCGUCAGUGCU-------GACGAG-------UGgGGGCuG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 29152 | 0.67 | 0.426996 |
Target: 5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3' miRNA: 3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 34099 | 0.66 | 0.475942 |
Target: 5'- cGGCGccCGCGACgGCgacaUCGCCgCCGACg -3' miRNA: 3'- -UCGUcaGUGCUGaCG----AGUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8869 | 0.66 | 0.475942 |
Target: 5'- cGCGG-CAUGAC-GCUCuccggacucauGCCCgCCGGCg -3' miRNA: 3'- uCGUCaGUGCUGaCGAG-----------UGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 5217 | 0.66 | 0.475942 |
Target: 5'- gGGCAGcUCGCGGCcgGcCUgAUCgCCGACg -3' miRNA: 3'- -UCGUC-AGUGCUGa-C-GAgUGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 37855 | 0.66 | 0.475942 |
Target: 5'- cGGuCGGUCGCGGCcggcgagGCUCAggCCCgGACg -3' miRNA: 3'- -UC-GUCAGUGCUGa------CGAGUg-GGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 35629 | 0.66 | 0.493213 |
Target: 5'- cGCGGUCccagaacacgaucgACGGgUGCUCGCCgcgccaccgcaCCGACg -3' miRNA: 3'- uCGUCAG--------------UGCUgACGAGUGGg----------GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 17647 | 0.66 | 0.475942 |
Target: 5'- cGGuCGGUCACGACcgUGUUCgcgggGCCgCCGAUc -3' miRNA: 3'- -UC-GUCAGUGCUG--ACGAG-----UGGgGGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 31836 | 0.66 | 0.52752 |
Target: 5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3' miRNA: 3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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