miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 8869 0.66 0.475942
Target:  5'- cGCGG-CAUGAC-GCUCuccggacucauGCCCgCCGGCg -3'
miRNA:   3'- uCGUCaGUGCUGaCGAG-----------UGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 5217 0.66 0.475942
Target:  5'- gGGCAGcUCGCGGCcgGcCUgAUCgCCGACg -3'
miRNA:   3'- -UCGUC-AGUGCUGa-C-GAgUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 37855 0.66 0.475942
Target:  5'- cGGuCGGUCGCGGCcggcgagGCUCAggCCCgGACg -3'
miRNA:   3'- -UC-GUCAGUGCUGa------CGAGUg-GGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 35629 0.66 0.493213
Target:  5'- cGCGGUCccagaacacgaucgACGGgUGCUCGCCgcgccaccgcaCCGACg -3'
miRNA:   3'- uCGUCAG--------------UGCUgACGAGUGGg----------GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 17647 0.66 0.475942
Target:  5'- cGGuCGGUCACGACcgUGUUCgcgggGCCgCCGAUc -3'
miRNA:   3'- -UC-GUCAGUGCUG--ACGAG-----UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 34630 0.66 0.506612
Target:  5'- cGGCGGUCGgGGCggUGCgcuGCUCCCGGu -3'
miRNA:   3'- -UCGUCAGUgCUG--ACGag-UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 31836 0.66 0.52752
Target:  5'- cAGCuGGUCAagGACggGUUCGCCCguCCGGCc -3'
miRNA:   3'- -UCG-UCAGUg-CUGa-CGAGUGGG--GGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.