miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 37808 0.71 0.257176
Target:  5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3'
miRNA:   3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5'
26268 5' -58.3 NC_005345.2 + 38518 0.7 0.307329
Target:  5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3'
miRNA:   3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 25186 0.69 0.314196
Target:  5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3'
miRNA:   3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 39245 0.69 0.322745
Target:  5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3'
miRNA:   3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 14915 0.69 0.322745
Target:  5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3'
miRNA:   3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 8461 0.69 0.346936
Target:  5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3'
miRNA:   3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5'
26268 5' -58.3 NC_005345.2 + 34630 0.66 0.506612
Target:  5'- cGGCGGUCGgGGCggUGCgcuGCUCCCGGu -3'
miRNA:   3'- -UCGUCAGUgCUG--ACGag-UGGGGGCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.