Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 37808 | 0.71 | 0.257176 |
Target: 5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3' miRNA: 3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 38518 | 0.7 | 0.307329 |
Target: 5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3' miRNA: 3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 25186 | 0.69 | 0.314196 |
Target: 5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3' miRNA: 3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 39245 | 0.69 | 0.322745 |
Target: 5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3' miRNA: 3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 14915 | 0.69 | 0.322745 |
Target: 5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3' miRNA: 3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 8461 | 0.69 | 0.346936 |
Target: 5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3' miRNA: 3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 34630 | 0.66 | 0.506612 |
Target: 5'- cGGCGGUCGgGGCggUGCgcuGCUCCCGGu -3' miRNA: 3'- -UCGUCAGUgCUG--ACGag-UGGGGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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