miRNA display CGI


Results 61 - 67 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 9503 0.68 0.372397
Target:  5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3'
miRNA:   3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 10103 0.68 0.372397
Target:  5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3'
miRNA:   3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 4094 0.69 0.355283
Target:  5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3'
miRNA:   3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 18912 0.69 0.346936
Target:  5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3'
miRNA:   3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 4950 0.69 0.33873
Target:  5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3'
miRNA:   3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 35714 0.69 0.33873
Target:  5'- uGcCGGaCGCGccgaaACUGCUCGCCCgCGGCg -3'
miRNA:   3'- uC-GUCaGUGC-----UGACGAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29784 0.77 0.105722
Target:  5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3'
miRNA:   3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.