Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26268 | 5' | -58.3 | NC_005345.2 | + | 9503 | 0.68 | 0.372397 |
Target: 5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3' miRNA: 3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 10103 | 0.68 | 0.372397 |
Target: 5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3' miRNA: 3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4094 | 0.69 | 0.355283 |
Target: 5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3' miRNA: 3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 18912 | 0.69 | 0.346936 |
Target: 5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3' miRNA: 3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 4950 | 0.69 | 0.33873 |
Target: 5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3' miRNA: 3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 35714 | 0.69 | 0.33873 |
Target: 5'- uGcCGGaCGCGccgaaACUGCUCGCCCgCGGCg -3' miRNA: 3'- uC-GUCaGUGC-----UGACGAGUGGGgGCUG- -5' |
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26268 | 5' | -58.3 | NC_005345.2 | + | 29784 | 0.77 | 0.105722 |
Target: 5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3' miRNA: 3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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