miRNA display CGI

Results 41 - 50 of 50 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
26269	3'	-56.7	NC_005345.2	+	35338	0.66	0.579656
	Target:  5'- aUCGGCgCGGCCGGC---GCGUGgaUGu -3' miRNA:   3'- -AGUUGgGCCGGCUGuacCGCACgaAC- -5'
26269	3'	-56.7	NC_005345.2	+	21329	0.66	0.579656
	Target:  5'- aCAGCUCGGUCGGguccucgccCGUGcGCG-GCUUGc -3' miRNA:   3'- aGUUGGGCCGGCU---------GUAC-CGCaCGAAC- -5'
26269	3'	-56.7	NC_005345.2	+	11191	0.66	0.590604
	Target:  5'- gCAGCCUGGUCGACGccGGCcUGUg-- -3' miRNA:   3'- aGUUGGGCCGGCUGUa-CCGcACGaac -5'
26269	3'	-56.7	NC_005345.2	+	769	0.66	0.590604
	Target:  5'- aUAGcCCCGGCCGGCGgcgGGgGaUGCc-- -3' miRNA:   3'- aGUU-GGGCCGGCUGUa--CCgC-ACGaac -5'
26269	3'	-56.7	NC_005345.2	+	7277	0.66	0.601587
	Target:  5'- aCAGCCCGGaCGAUgacGGUGUGUa-- -3' miRNA:   3'- aGUUGGGCCgGCUGua-CCGCACGaac -5'
26269	3'	-56.7	NC_005345.2	+	14572	0.66	0.601587
	Target:  5'- -gGGCCCGGCCGugucggcacuacACAaGGCGgagcgGCUc- -3' miRNA:   3'- agUUGGGCCGGC------------UGUaCCGCa----CGAac -5'
26269	3'	-56.7	NC_005345.2	+	3947	0.66	0.612597
	Target:  5'- --cGCCgCGGCCGGCAgccucucgGGCG-GCa-- -3' miRNA:   3'- aguUGG-GCCGGCUGUa-------CCGCaCGaac -5'
26269	3'	-56.7	NC_005345.2	+	2828	0.66	0.612597
	Target:  5'- cCAGCgCCgcgaGGCCGACA--GCGUGCg-- -3' miRNA:   3'- aGUUG-GG----CCGGCUGUacCGCACGaac -5'
26269	3'	-56.7	NC_005345.2	+	47824	0.66	0.612597
	Target:  5'- gCGACCCGGCCGGCAaccagaaGCagaaaUGCUUu -3' miRNA:   3'- aGUUGGGCCGGCUGUac-----CGc----ACGAAc -5'
26269	3'	-56.7	NC_005345.2	+	1892	0.66	0.612597
	Target:  5'- -aGACCCgcgaggcaGGCCGACGguuguacgGGCGUcggcuacuGCUUGu -3' miRNA:   3'- agUUGGG--------CCGGCUGUa-------CCGCA--------CGAAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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