miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 3' -56.7 NC_005345.2 + 27700 0.68 0.494282
Target:  5'- gUCGACCUGGUUcGCAUGGUGUccGCa-- -3'
miRNA:   3'- -AGUUGGGCCGGcUGUACCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 41543 0.68 0.494282
Target:  5'- gCGACCUGGUCGACGacGuCGUGCg-- -3'
miRNA:   3'- aGUUGGGCCGGCUGUacC-GCACGaac -5'
26269 3' -56.7 NC_005345.2 + 22021 0.68 0.48399
Target:  5'- cUCGACgCCGGCCGGugccgcCGUGGCGccgaGCa-- -3'
miRNA:   3'- -AGUUG-GGCCGGCU------GUACCGCa---CGaac -5'
26269 3' -56.7 NC_005345.2 + 40279 0.68 0.473802
Target:  5'- aCGGCCCGGCCGugAUcGUGgGCc-- -3'
miRNA:   3'- aGUUGGGCCGGCugUAcCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 2044 0.68 0.473802
Target:  5'- -gGGCCCGGCgCGGCccGGCGgGCc-- -3'
miRNA:   3'- agUUGGGCCG-GCUGuaCCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 19984 0.68 0.473802
Target:  5'- cCGACCCGGUucgccgagggCGACA-GGCGgGCUg- -3'
miRNA:   3'- aGUUGGGCCG----------GCUGUaCCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 30568 0.68 0.453757
Target:  5'- uUCGACCCGGCgguguuccCGACGcugGGCGcGCa-- -3'
miRNA:   3'- -AGUUGGGCCG--------GCUGUa--CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 4546 0.69 0.434181
Target:  5'- aCGACCCGGaCGACGgcaGCGUGUa-- -3'
miRNA:   3'- aGUUGGGCCgGCUGUac-CGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 23856 0.69 0.434181
Target:  5'- cCAGCCCGGCCGGgAcgacGGCGaGCc-- -3'
miRNA:   3'- aGUUGGGCCGGCUgUa---CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 48215 0.69 0.434181
Target:  5'- uUCAACCCggcGGCCGACcuggacauUGGCGagGCg-- -3'
miRNA:   3'- -AGUUGGG---CCGGCUGu-------ACCGCa-CGaac -5'
26269 3' -56.7 NC_005345.2 + 40774 0.69 0.424578
Target:  5'- -gGGCCgguCGGCCGGCGcgGGCGUGUc-- -3'
miRNA:   3'- agUUGG---GCCGGCUGUa-CCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 38533 0.69 0.424578
Target:  5'- cUCGACCCgGGCCGACcgGccGCGccGCUg- -3'
miRNA:   3'- -AGUUGGG-CCGGCUGuaC--CGCa-CGAac -5'
26269 3' -56.7 NC_005345.2 + 3623 0.69 0.40576
Target:  5'- aCGGCCCGcGCCG-CA-GGUGUGCc-- -3'
miRNA:   3'- aGUUGGGC-CGGCuGUaCCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 36825 0.7 0.391089
Target:  5'- cUCAugCUGGCCGGCGgugcaggccggacccUGGCG-GCa-- -3'
miRNA:   3'- -AGUugGGCCGGCUGU---------------ACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 31641 0.7 0.387475
Target:  5'- --cGCCCGGCCGGCGaccGGCG-GCc-- -3'
miRNA:   3'- aguUGGGCCGGCUGUa--CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 30691 0.7 0.369741
Target:  5'- aCGAUCCGGCCGGCugcgGGUGgccGCggUGa -3'
miRNA:   3'- aGUUGGGCCGGCUGua--CCGCa--CGa-AC- -5'
26269 3' -56.7 NC_005345.2 + 27131 0.7 0.369741
Target:  5'- gCGGCaCCGGCCGGCGUcgagcugcccgaGGCGcUGCg-- -3'
miRNA:   3'- aGUUG-GGCCGGCUGUA------------CCGC-ACGaac -5'
26269 3' -56.7 NC_005345.2 + 43848 0.7 0.35257
Target:  5'- aCuGCCCGGUCGACggGGCGUcgGCc-- -3'
miRNA:   3'- aGuUGGGCCGGCUGuaCCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 40337 0.7 0.344199
Target:  5'- -gAGCCCGGCCGGCgucucgucGUGGCGaGUg-- -3'
miRNA:   3'- agUUGGGCCGGCUG--------UACCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 39525 0.71 0.319951
Target:  5'- -gGACCCGGCCGAUcgagcaGGuCGUGCa-- -3'
miRNA:   3'- agUUGGGCCGGCUGua----CC-GCACGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.