Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26269 | 5' | -60 | NC_005345.2 | + | 41866 | 0.67 | 0.398982 |
Target: 5'- -gCGGuUCGCCucgGCGAuCGcGCGGGCGGc -3' miRNA: 3'- aaGCU-AGUGG---CGCU-GCaCGCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 28916 | 0.67 | 0.390078 |
Target: 5'- cUCGAUCguGCCacgcagGCGAUGcGCGcGGCGGg -3' miRNA: 3'- aAGCUAG--UGG------CGCUGCaCGC-CCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 24854 | 0.67 | 0.381304 |
Target: 5'- -gCGGUC-CCGCGGCGUGaCGGacGCGa- -3' miRNA: 3'- aaGCUAGuGGCGCUGCAC-GCC--CGCca -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 5246 | 0.67 | 0.364157 |
Target: 5'- -gCGGUaCACgGUgGGCGUGaCGGGCGGc -3' miRNA: 3'- aaGCUA-GUGgCG-CUGCAC-GCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 3422 | 0.67 | 0.355786 |
Target: 5'- -gCGGcgGgCGCGGCG-GCGGGCGGc -3' miRNA: 3'- aaGCUagUgGCGCUGCaCGCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 37346 | 0.67 | 0.352475 |
Target: 5'- gUCGAaCGCCGCGGCGUGCccgagcagcuuuGCGGc -3' miRNA: 3'- aAGCUaGUGGCGCUGCACGcc----------CGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 14917 | 0.68 | 0.347551 |
Target: 5'- -gCGGgccgCGgCGCGGCGgcugcaGCGGGCGGc -3' miRNA: 3'- aaGCUa---GUgGCGCUGCa-----CGCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 8924 | 0.68 | 0.339453 |
Target: 5'- --gGAUCACgGCGGCcgcccccGUGGGCGGg -3' miRNA: 3'- aagCUAGUGgCGCUGca-----CGCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 19064 | 0.68 | 0.308442 |
Target: 5'- -gUGGUCGCCuacggggucuacGCGAuCGUGCGGGCcGUg -3' miRNA: 3'- aaGCUAGUGG------------CGCU-GCACGCCCGcCA- -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 2814 | 0.68 | 0.308442 |
Target: 5'- cUCGAUCgccugcuccagcGCCGCGaggccgacaGCGUGCgcucGGGCGGc -3' miRNA: 3'- aAGCUAG------------UGGCGC---------UGCACG----CCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 25032 | 0.68 | 0.308442 |
Target: 5'- cUCGGUCACCGCGGCGauacGCacgaGCGGc -3' miRNA: 3'- aAGCUAGUGGCGCUGCa---CGcc--CGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 43930 | 0.68 | 0.308442 |
Target: 5'- -gCGAUCaggccgGCCGCGAgcugcccggcCGUGCcgGGGCGGa -3' miRNA: 3'- aaGCUAG------UGGCGCU----------GCACG--CCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 35006 | 0.69 | 0.301035 |
Target: 5'- -cCGGggCGCUGCGgcggccACGUGgGGGCGGg -3' miRNA: 3'- aaGCUa-GUGGCGC------UGCACgCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 9337 | 0.69 | 0.301035 |
Target: 5'- -gCGAcCAgUGCGACGcaugguggcUGCGGGCGGc -3' miRNA: 3'- aaGCUaGUgGCGCUGC---------ACGCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 34733 | 0.69 | 0.301035 |
Target: 5'- cUCGAUCGCCcggcaggcgucgGCGACGUGCaGcCGGa -3' miRNA: 3'- aAGCUAGUGG------------CGCUGCACGcCcGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 45819 | 0.69 | 0.301035 |
Target: 5'- gUCGucgCgACCGUGACGUGCacGGCGGc -3' miRNA: 3'- aAGCua-G-UGGCGCUGCACGc-CCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 29046 | 0.69 | 0.286635 |
Target: 5'- gUUCGAguuUCugCGUGGCGgcgGCGGGCu-- -3' miRNA: 3'- -AAGCU---AGugGCGCUGCa--CGCCCGcca -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 11804 | 0.69 | 0.27757 |
Target: 5'- cUCGGgcaCGCCGCGGCGUucgacaaccggaccGUGGGCGa- -3' miRNA: 3'- aAGCUa--GUGGCGCUGCA--------------CGCCCGCca -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 11580 | 0.69 | 0.272783 |
Target: 5'- cUCGAcgacgggcgccUCGCgGUGGCGUG-GGGCGGc -3' miRNA: 3'- aAGCU-----------AGUGgCGCUGCACgCCCGCCa -5' |
|||||||
26269 | 5' | -60 | NC_005345.2 | + | 8687 | 0.7 | 0.25302 |
Target: 5'- -gCGGUgGCCGUGACGU--GGGCGGc -3' miRNA: 3'- aaGCUAgUGGCGCUGCAcgCCCGCCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home