miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2627 3' -60 NC_001491.2 + 43705 0.66 0.771003
Target:  5'- gUGUGUCUAGGcGGCGCGCUucucucuAUCCGa -3'
miRNA:   3'- -ACACAGGUCC-CUGCGUGAccc----UGGGC- -5'
2627 3' -60 NC_001491.2 + 58216 0.66 0.761823
Target:  5'- cGUcUCCcGGGACGC-UUGcGGACUCGu -3'
miRNA:   3'- aCAcAGGuCCCUGCGuGAC-CCUGGGC- -5'
2627 3' -60 NC_001491.2 + 68543 0.66 0.743147
Target:  5'- cGUG-CUGGGGGCGaCGCUGGcACCg- -3'
miRNA:   3'- aCACaGGUCCCUGC-GUGACCcUGGgc -5'
2627 3' -60 NC_001491.2 + 10099 0.66 0.723144
Target:  5'- cGUGUCggcggaggCAGcGGACGCGCUccggagcggcgccGGGccGCCCGc -3'
miRNA:   3'- aCACAG--------GUC-CCUGCGUGA-------------CCC--UGGGC- -5'
2627 3' -60 NC_001491.2 + 1944 0.67 0.695001
Target:  5'- gGUGgcgcucCCGGGGccaGCGCACggcgcaGGcGACCCGc -3'
miRNA:   3'- aCACa-----GGUCCC---UGCGUGa-----CC-CUGGGC- -5'
2627 3' -60 NC_001491.2 + 2729 0.67 0.695001
Target:  5'- gGUGgcCCGGGGugGCcacccugcGCuUGGGGgCCGg -3'
miRNA:   3'- aCACa-GGUCCCugCG--------UG-ACCCUgGGC- -5'
2627 3' -60 NC_001491.2 + 35729 0.68 0.65554
Target:  5'- -cUG-CCGGGuGGCGCuGCUGGaGCCCGa -3'
miRNA:   3'- acACaGGUCC-CUGCG-UGACCcUGGGC- -5'
2627 3' -60 NC_001491.2 + 51021 0.68 0.605867
Target:  5'- --cGUCCAGGGuACGgGCgaugGGGAUUCa -3'
miRNA:   3'- acaCAGGUCCC-UGCgUGa---CCCUGGGc -5'
2627 3' -60 NC_001491.2 + 5332 0.73 0.361623
Target:  5'- gGUG-CCGGGGACGCcgGCUGGGcggcagccGCCgGg -3'
miRNA:   3'- aCACaGGUCCCUGCG--UGACCC--------UGGgC- -5'
2627 3' -60 NC_001491.2 + 112084 0.75 0.270839
Target:  5'- -aUGUCCAugucGGGACuGUugUGGGGCCUGg -3'
miRNA:   3'- acACAGGU----CCCUG-CGugACCCUGGGC- -5'
2627 3' -60 NC_001491.2 + 145419 1.09 0.00138
Target:  5'- cUGUGUCCAGGGACGCACUGGGACCCGa -3'
miRNA:   3'- -ACACAGGUCCCUGCGUGACCCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.