miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2627 5' -54.2 NC_001491.2 + 10515 0.66 0.938963
Target:  5'- ---cAGCCGcCgcgGCGUACCUGcGcGCCc -3'
miRNA:   3'- aagaUCGGCuGa--UGCAUGGAC-CuCGG- -5'
2627 5' -54.2 NC_001491.2 + 93566 0.66 0.933993
Target:  5'- gUCUAGCCGcgUACGcGCC-GaGGGCCu -3'
miRNA:   3'- aAGAUCGGCugAUGCaUGGaC-CUCGG- -5'
2627 5' -54.2 NC_001491.2 + 83310 0.66 0.931936
Target:  5'- gUUUUAGCCacGGCUGCGgGCCccgacuuuuucggGGAGCUa -3'
miRNA:   3'- -AAGAUCGG--CUGAUGCaUGGa------------CCUCGG- -5'
2627 5' -54.2 NC_001491.2 + 109325 0.66 0.928775
Target:  5'- -aCUuGCCGuagaaauCUACGUACUUGGcuAGCUg -3'
miRNA:   3'- aaGAuCGGCu------GAUGCAUGGACC--UCGG- -5'
2627 5' -54.2 NC_001491.2 + 114258 0.67 0.923307
Target:  5'- -cCUGGCCaGCUGCGUgugGCgUGuGAGCa -3'
miRNA:   3'- aaGAUCGGcUGAUGCA---UGgAC-CUCGg -5'
2627 5' -54.2 NC_001491.2 + 5321 0.69 0.839019
Target:  5'- ---gAGCCgGGCUGgGUGCCggGGAcGCCg -3'
miRNA:   3'- aagaUCGG-CUGAUgCAUGGa-CCU-CGG- -5'
2627 5' -54.2 NC_001491.2 + 60949 0.71 0.717116
Target:  5'- aUCUcGCCGACUGCa-GCUUGG-GCCu -3'
miRNA:   3'- aAGAuCGGCUGAUGcaUGGACCuCGG- -5'
2627 5' -54.2 NC_001491.2 + 35663 0.71 0.706937
Target:  5'- ---cGGCCGGCgcgGCGcugggGCCgUGGAGCCc -3'
miRNA:   3'- aagaUCGGCUGa--UGCa----UGG-ACCUCGG- -5'
2627 5' -54.2 NC_001491.2 + 3827 0.72 0.655246
Target:  5'- -gCUGGCCGcgGCaGCGgcgGCCUGG-GCCg -3'
miRNA:   3'- aaGAUCGGC--UGaUGCa--UGGACCuCGG- -5'
2627 5' -54.2 NC_001491.2 + 2015 0.76 0.462543
Target:  5'- -aCUGGCUGAUcGCGggaccguCCUGGGGCCa -3'
miRNA:   3'- aaGAUCGGCUGaUGCau-----GGACCUCGG- -5'
2627 5' -54.2 NC_001491.2 + 145454 1.09 0.003532
Target:  5'- gUUCUAGCCGACUACGUACCUGGAGCCu -3'
miRNA:   3'- -AAGAUCGGCUGAUGCAUGGACCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.