miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26270 5' -58 NC_005345.2 + 40618 0.66 0.523809
Target:  5'- cGGCgugcccGAACGGUcgaGGCgGCCCGUccacugccAGUGg -3'
miRNA:   3'- uCCGa-----CUUGUCG---CCGaCGGGCA--------UCAC- -5'
26270 5' -58 NC_005345.2 + 34151 0.66 0.523809
Target:  5'- uGGC---GCGGCGGCgGCCCcgaggAGUGg -3'
miRNA:   3'- uCCGacuUGUCGCCGaCGGGca---UCAC- -5'
26270 5' -58 NC_005345.2 + 35590 0.66 0.520631
Target:  5'- aAGGCgugGGACAGCgucgucaaggugucGGCgaaGCCCGUGa-- -3'
miRNA:   3'- -UCCGa--CUUGUCG--------------CCGa--CGGGCAUcac -5'
26270 5' -58 NC_005345.2 + 37917 0.66 0.513245
Target:  5'- cGGGCUGcGGCAGCgcgGGCagucaugcccaUGCCCGUGc-- -3'
miRNA:   3'- -UCCGAC-UUGUCG---CCG-----------ACGGGCAUcac -5'
26270 5' -58 NC_005345.2 + 46022 0.66 0.502771
Target:  5'- cGGCUGuGCAGUGGCgccucgGCgCGaAGUa -3'
miRNA:   3'- uCCGACuUGUCGCCGa-----CGgGCaUCAc -5'
26270 5' -58 NC_005345.2 + 7328 0.66 0.49239
Target:  5'- cGGCgGAcgccgagucGCAcGCGGUgugGCCCGcGGUGg -3'
miRNA:   3'- uCCGaCU---------UGU-CGCCGa--CGGGCaUCAC- -5'
26270 5' -58 NC_005345.2 + 25527 0.66 0.491358
Target:  5'- cGGCUGcguaagcGGCAGgGGCaGCUCGacgAGUGg -3'
miRNA:   3'- uCCGAC-------UUGUCgCCGaCGGGCa--UCAC- -5'
26270 5' -58 NC_005345.2 + 44260 0.66 0.471934
Target:  5'- cGGCgagcaucGAcucGCAGCGGC-GCCgGUAGUc -3'
miRNA:   3'- uCCGa------CU---UGUCGCCGaCGGgCAUCAc -5'
26270 5' -58 NC_005345.2 + 7063 0.67 0.451917
Target:  5'- cGGCcGGACuacGCGGCcgagGCCCGgaAGUGc -3'
miRNA:   3'- uCCGaCUUGu--CGCCGa---CGGGCa-UCAC- -5'
26270 5' -58 NC_005345.2 + 35001 0.67 0.442083
Target:  5'- cGGCgccgGGGCGcuGCGGCgGCCaCGUGGg- -3'
miRNA:   3'- uCCGa---CUUGU--CGCCGaCGG-GCAUCac -5'
26270 5' -58 NC_005345.2 + 35486 0.67 0.422787
Target:  5'- cGGCgucgaGGGCGGCGcGCUGCUCGUcGg- -3'
miRNA:   3'- uCCGa----CUUGUCGC-CGACGGGCAuCac -5'
26270 5' -58 NC_005345.2 + 10602 0.67 0.422787
Target:  5'- uGGCacGAGCAGCGGCgcggccggucgGCCCG-GGUc -3'
miRNA:   3'- uCCGa-CUUGUCGCCGa----------CGGGCaUCAc -5'
26270 5' -58 NC_005345.2 + 9862 0.68 0.404005
Target:  5'- uGGCacGAGCAGgGGCUGCUCGa---- -3'
miRNA:   3'- uCCGa-CUUGUCgCCGACGGGCaucac -5'
26270 5' -58 NC_005345.2 + 3409 0.68 0.394814
Target:  5'- cGGGCUGAGagaGGCGGCggGCgCGgcGg- -3'
miRNA:   3'- -UCCGACUUg--UCGCCGa-CGgGCauCac -5'
26270 5' -58 NC_005345.2 + 47328 0.68 0.376842
Target:  5'- aAGGCgggUGAGCAGCaGUgaagaagaucauUGCCCGUgcGGUGu -3'
miRNA:   3'- -UCCG---ACUUGUCGcCG------------ACGGGCA--UCAC- -5'
26270 5' -58 NC_005345.2 + 37425 0.69 0.350938
Target:  5'- cGGCgaguUGGuacGCGGCGGCgGCCCGcUGGUc -3'
miRNA:   3'- uCCG----ACU---UGUCGCCGaCGGGC-AUCAc -5'
26270 5' -58 NC_005345.2 + 6478 0.69 0.350938
Target:  5'- cGaGCUGuACGGCGGCgaGCCCGaggcGUGg -3'
miRNA:   3'- uC-CGACuUGUCGCCGa-CGGGCau--CAC- -5'
26270 5' -58 NC_005345.2 + 38726 0.7 0.303013
Target:  5'- cGGCUGGACGGUGGUa-UCCGgGGUGg -3'
miRNA:   3'- uCCGACUUGUCGCCGacGGGCaUCAC- -5'
26270 5' -58 NC_005345.2 + 43114 0.7 0.280294
Target:  5'- cGGUgagcuGCAGUGGCUGCUCGUcguacacGGUGg -3'
miRNA:   3'- uCCGacu--UGUCGCCGACGGGCA-------UCAC- -5'
26270 5' -58 NC_005345.2 + 4918 0.7 0.273957
Target:  5'- cGGCUGcguaGGCGGUUGCCCacacGGUGg -3'
miRNA:   3'- uCCGACuug-UCGCCGACGGGca--UCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.