miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 9264 0.69 0.225973
Target:  5'- gCGGCCGacaaGuCCCGCAugucGGCCGCgGCGUAc -3'
miRNA:   3'- -GCUGGCa---CuGGGUGU----CCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 18157 0.69 0.231739
Target:  5'- aGGCCG-GACCgGgCGGGCCGaucaccucgaacCGCGCGc -3'
miRNA:   3'- gCUGGCaCUGGgU-GUCCGGC------------GCGCGU- -5'
26271 3' -62 NC_005345.2 + 34499 0.69 0.24002
Target:  5'- cCGGCCG-GugCCgaggacgcggucgagGCGGGCCGCGgccuCGCGg -3'
miRNA:   3'- -GCUGGCaCugGG---------------UGUCCGGCGC----GCGU- -5'
26271 3' -62 NC_005345.2 + 31830 0.69 0.225973
Target:  5'- gCGugCGUGcACCCGCGgcGGgUGCgGCGCAc -3'
miRNA:   3'- -GCugGCAC-UGGGUGU--CCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 38534 0.69 0.214805
Target:  5'- uCGAcCCG-GGCCgACcGGCCGCGcCGCu -3'
miRNA:   3'- -GCU-GGCaCUGGgUGuCCGGCGC-GCGu -5'
26271 3' -62 NC_005345.2 + 17455 0.69 0.231739
Target:  5'- uCGAgCGUGaacGCCCaACGGGCUGCGCc-- -3'
miRNA:   3'- -GCUgGCAC---UGGG-UGUCCGGCGCGcgu -5'
26271 3' -62 NC_005345.2 + 8219 0.69 0.23408
Target:  5'- uCGGCCGUgcuguccggguagacGACCCGCAGGaCGUcgccggguucgaGCGCGg -3'
miRNA:   3'- -GCUGGCA---------------CUGGGUGUCCgGCG------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 37694 0.7 0.198944
Target:  5'- uCGGCCGUGGgccgccaguCCUGCGGGaUCGCGCuGCGg -3'
miRNA:   3'- -GCUGGCACU---------GGGUGUCC-GGCGCG-CGU- -5'
26271 3' -62 NC_005345.2 + 10285 0.7 0.209401
Target:  5'- gCGGCCGgcgacaccgGACCCgaGCGGGaaGCGgGCAg -3'
miRNA:   3'- -GCUGGCa--------CUGGG--UGUCCggCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 9591 0.7 0.184113
Target:  5'- aCGACCGgccggGACCgGCcgcgGGGCCG-GUGCAc -3'
miRNA:   3'- -GCUGGCa----CUGGgUG----UCCGGCgCGCGU- -5'
26271 3' -62 NC_005345.2 + 31651 0.7 0.204114
Target:  5'- gCGACCGgcGGCCCGCAGuuccuucccgacGCCGagacagGCGCAg -3'
miRNA:   3'- -GCUGGCa-CUGGGUGUC------------CGGCg-----CGCGU- -5'
26271 3' -62 NC_005345.2 + 2044 0.7 0.204114
Target:  5'- gGGcCCGgcgcGGCCCgGCGGGCCGCG-GCGa -3'
miRNA:   3'- gCU-GGCa---CUGGG-UGUCCGGCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 18994 0.7 0.184113
Target:  5'- uGGCCGgcgggacGACCUcgACGGGUgGCGCGCc -3'
miRNA:   3'- gCUGGCa------CUGGG--UGUCCGgCGCGCGu -5'
26271 3' -62 NC_005345.2 + 2368 0.7 0.184113
Target:  5'- aCGGCgCGUGACCUcCccGUCGCGCGCc -3'
miRNA:   3'- -GCUG-GCACUGGGuGucCGGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 11459 0.71 0.164561
Target:  5'- gGACUGgcGGCCCACggccgacgacaucaGGGCCGCGCagGCGg -3'
miRNA:   3'- gCUGGCa-CUGGGUG--------------UCCGGCGCG--CGU- -5'
26271 3' -62 NC_005345.2 + 47946 0.71 0.167612
Target:  5'- gCGG-CGUGGCCCGCGGGCCGgacugccgagccgccCGUGUg -3'
miRNA:   3'- -GCUgGCACUGGGUGUCCGGC---------------GCGCGu -5'
26271 3' -62 NC_005345.2 + 38854 0.71 0.170267
Target:  5'- gGGCCGcu-CCCACAGcCCGCGcCGCAu -3'
miRNA:   3'- gCUGGCacuGGGUGUCcGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 1193 0.71 0.153257
Target:  5'- gCGGCuCGgcaguccGGCCCGCGGGCCacgcCGCGCGg -3'
miRNA:   3'- -GCUG-GCa------CUGGGUGUCCGGc---GCGCGU- -5'
26271 3' -62 NC_005345.2 + 3604 0.71 0.153257
Target:  5'- uCGGCCcacagGUGAcCCCACGGcCCGCGcCGCAg -3'
miRNA:   3'- -GCUGG-----CACU-GGGUGUCcGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 26787 0.72 0.141527
Target:  5'- gGAUCGUGGCCgGC--GCCGCGuCGCAg -3'
miRNA:   3'- gCUGGCACUGGgUGucCGGCGC-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.