miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 20203 0.72 0.137803
Target:  5'- uCGugCGUGucCCCAUAGacccGCCGCaGCGCAu -3'
miRNA:   3'- -GCugGCACu-GGGUGUC----CGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 21364 0.67 0.296384
Target:  5'- -cGCCacaucacGGCCUGCAGGCCGgUGCGCGg -3'
miRNA:   3'- gcUGGca-----CUGGGUGUCCGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 21969 0.66 0.333634
Target:  5'- aCGGCCGgcgguaGACCUccuccgGCGGGaCGCcGCGCAg -3'
miRNA:   3'- -GCUGGCa-----CUGGG------UGUCCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 22058 0.67 0.296384
Target:  5'- cCGACCGcggugGGuCCgGCAcaCCGCGCGCAa -3'
miRNA:   3'- -GCUGGCa----CU-GGgUGUccGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 23351 0.67 0.289333
Target:  5'- aGACCGUGcugcGCUgggaGCGGGCCGagGCGCc -3'
miRNA:   3'- gCUGGCAC----UGGg---UGUCCGGCg-CGCGu -5'
26271 3' -62 NC_005345.2 + 23945 0.67 0.296384
Target:  5'- cCGGCCGggggUGAUucaCCGCGGGCUGCuGuCGCGg -3'
miRNA:   3'- -GCUGGC----ACUG---GGUGUCCGGCG-C-GCGU- -5'
26271 3' -62 NC_005345.2 + 24296 0.67 0.289333
Target:  5'- gCGuCCGUcACgCCGCGGGaCCGCuuGCGCGa -3'
miRNA:   3'- -GCuGGCAcUG-GGUGUCC-GGCG--CGCGU- -5'
26271 3' -62 NC_005345.2 + 24487 0.69 0.224267
Target:  5'- aCGGCCGgucccgGGCCCGCGGGauccuggucgaccaCCGCGagGCGc -3'
miRNA:   3'- -GCUGGCa-----CUGGGUGUCC--------------GGCGCg-CGU- -5'
26271 3' -62 NC_005345.2 + 25488 0.67 0.296384
Target:  5'- cCGGCCGcGACCCugguCGGcGCCGUcCGCc -3'
miRNA:   3'- -GCUGGCaCUGGGu---GUC-CGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 26787 0.72 0.141527
Target:  5'- gGAUCGUGGCCgGC--GCCGCGuCGCAg -3'
miRNA:   3'- gCUGGCACUGGgUGucCGGCGC-GCGU- -5'
26271 3' -62 NC_005345.2 + 26920 0.66 0.3742
Target:  5'- cCGACCGguacGACgCGCugucGGGuuGCuGCGCGa -3'
miRNA:   3'- -GCUGGCa---CUGgGUG----UCCggCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 27131 0.67 0.289333
Target:  5'- gGACCGUccggcgGGCCCgGCAuGCCGCcGUGCGg -3'
miRNA:   3'- gCUGGCA------CUGGG-UGUcCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 27197 0.74 0.105238
Target:  5'- gGGCCGUGAUCggcaGCGGGUCG-GCGCAg -3'
miRNA:   3'- gCUGGCACUGGg---UGUCCGGCgCGCGU- -5'
26271 3' -62 NC_005345.2 + 27291 0.66 0.352695
Target:  5'- aGACC--GACCUGCAGcucgcccgcacgcauGCCGCGCaGCAg -3'
miRNA:   3'- gCUGGcaCUGGGUGUC---------------CGGCGCG-CGU- -5'
26271 3' -62 NC_005345.2 + 27558 0.67 0.310884
Target:  5'- uCGGCuCGUcgGACCCcgGC-GGCCGgGCGCc -3'
miRNA:   3'- -GCUG-GCA--CUGGG--UGuCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 27780 0.69 0.220329
Target:  5'- gCGcACCG--GCCUGCAGGCCGUgaugugGCGCAa -3'
miRNA:   3'- -GC-UGGCacUGGGUGUCCGGCG------CGCGU- -5'
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5'
26271 3' -62 NC_005345.2 + 28917 0.76 0.069672
Target:  5'- uCGAUCGUG-CCaCGCAGGCgaUGCGCGCGg -3'
miRNA:   3'- -GCUGGCACuGG-GUGUCCG--GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 29871 0.66 0.357579
Target:  5'- cCGGCUGUGgACgCACGcGGCCGC-CGUc -3'
miRNA:   3'- -GCUGGCAC-UGgGUGU-CCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 30441 0.67 0.303567
Target:  5'- cCGACCGggcacACCCccgauccggGCAcGCUGCGCGCGa -3'
miRNA:   3'- -GCUGGCac---UGGG---------UGUcCGGCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.