Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26271 | 3' | -62 | NC_005345.2 | + | 27558 | 0.67 | 0.310884 |
Target: 5'- uCGGCuCGUcgGACCCcgGC-GGCCGgGCGCc -3' miRNA: 3'- -GCUG-GCA--CUGGG--UGuCCGGCgCGCGu -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 27291 | 0.66 | 0.352695 |
Target: 5'- aGACC--GACCUGCAGcucgcccgcacgcauGCCGCGCaGCAg -3' miRNA: 3'- gCUGGcaCUGGGUGUC---------------CGGCGCG-CGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 27197 | 0.74 | 0.105238 |
Target: 5'- gGGCCGUGAUCggcaGCGGGUCG-GCGCAg -3' miRNA: 3'- gCUGGCACUGGg---UGUCCGGCgCGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 27131 | 0.67 | 0.289333 |
Target: 5'- gGACCGUccggcgGGCCCgGCAuGCCGCcGUGCGg -3' miRNA: 3'- gCUGGCA------CUGGG-UGUcCGGCG-CGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 26920 | 0.66 | 0.3742 |
Target: 5'- cCGACCGguacGACgCGCugucGGGuuGCuGCGCGa -3' miRNA: 3'- -GCUGGCa---CUGgGUG----UCCggCG-CGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 26787 | 0.72 | 0.141527 |
Target: 5'- gGAUCGUGGCCgGC--GCCGCGuCGCAg -3' miRNA: 3'- gCUGGCACUGGgUGucCGGCGC-GCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 25488 | 0.67 | 0.296384 |
Target: 5'- cCGGCCGcGACCCugguCGGcGCCGUcCGCc -3' miRNA: 3'- -GCUGGCaCUGGGu---GUC-CGGCGcGCGu -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 24487 | 0.69 | 0.224267 |
Target: 5'- aCGGCCGgucccgGGCCCGCGGGauccuggucgaccaCCGCGagGCGc -3' miRNA: 3'- -GCUGGCa-----CUGGGUGUCC--------------GGCGCg-CGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 24296 | 0.67 | 0.289333 |
Target: 5'- gCGuCCGUcACgCCGCGGGaCCGCuuGCGCGa -3' miRNA: 3'- -GCuGGCAcUG-GGUGUCC-GGCG--CGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 23945 | 0.67 | 0.296384 |
Target: 5'- cCGGCCGggggUGAUucaCCGCGGGCUGCuGuCGCGg -3' miRNA: 3'- -GCUGGC----ACUG---GGUGUCCGGCG-C-GCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 23351 | 0.67 | 0.289333 |
Target: 5'- aGACCGUGcugcGCUgggaGCGGGCCGagGCGCc -3' miRNA: 3'- gCUGGCAC----UGGg---UGUCCGGCg-CGCGu -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 22058 | 0.67 | 0.296384 |
Target: 5'- cCGACCGcggugGGuCCgGCAcaCCGCGCGCAa -3' miRNA: 3'- -GCUGGCa----CU-GGgUGUccGGCGCGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 21969 | 0.66 | 0.333634 |
Target: 5'- aCGGCCGgcgguaGACCUccuccgGCGGGaCGCcGCGCAg -3' miRNA: 3'- -GCUGGCa-----CUGGG------UGUCCgGCG-CGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 21364 | 0.67 | 0.296384 |
Target: 5'- -cGCCacaucacGGCCUGCAGGCCGgUGCGCGg -3' miRNA: 3'- gcUGGca-----CUGGGUGUCCGGC-GCGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 20203 | 0.72 | 0.137803 |
Target: 5'- uCGugCGUGucCCCAUAGacccGCCGCaGCGCAu -3' miRNA: 3'- -GCugGCACu-GGGUGUC----CGGCG-CGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 19262 | 0.72 | 0.141527 |
Target: 5'- gGACCGggauGCCgACGgcGGCCGCGUGCGu -3' miRNA: 3'- gCUGGCac--UGGgUGU--CCGGCGCGCGU- -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 18994 | 0.7 | 0.184113 |
Target: 5'- uGGCCGgcgggacGACCUcgACGGGUgGCGCGCc -3' miRNA: 3'- gCUGGCa------CUGGG--UGUCCGgCGCGCGu -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 18268 | 0.68 | 0.282415 |
Target: 5'- cCGcGCCGUcGCCCGCAcccGGagcacCCGCGCGCu -3' miRNA: 3'- -GC-UGGCAcUGGGUGU---CC-----GGCGCGCGu -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 18215 | 0.72 | 0.149252 |
Target: 5'- gCGGCCGUGcACCgugaGCGGGCCGCcgGCGg- -3' miRNA: 3'- -GCUGGCAC-UGGg---UGUCCGGCG--CGCgu -5' |
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26271 | 3' | -62 | NC_005345.2 | + | 18157 | 0.69 | 0.231739 |
Target: 5'- aGGCCG-GACCgGgCGGGCCGaucaccucgaacCGCGCGc -3' miRNA: 3'- gCUGGCaCUGGgU-GUCCGGC------------GCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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