miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 17916 0.68 0.249784
Target:  5'- cCGACCccgGACCCGCcguacacccGGCCGCacccggguGCGCAc -3'
miRNA:   3'- -GCUGGca-CUGGGUGu--------CCGGCG--------CGCGU- -5'
26271 3' -62 NC_005345.2 + 17882 0.66 0.357579
Target:  5'- -cGCCGUGGCguagucgccgaUCACGGcGCCGCGCaCAc -3'
miRNA:   3'- gcUGGCACUG-----------GGUGUC-CGGCGCGcGU- -5'
26271 3' -62 NC_005345.2 + 17656 0.66 0.341483
Target:  5'- aCGACCGUG-UUCGCgGGGCCGCcgaucCGCu -3'
miRNA:   3'- -GCUGGCACuGGGUG-UCCGGCGc----GCGu -5'
26271 3' -62 NC_005345.2 + 17534 0.8 0.034564
Target:  5'- gGACCGUgucgccaugcGAUCCGCGGGCCGCGCcgaGCAg -3'
miRNA:   3'- gCUGGCA----------CUGGGUGUCCGGCGCG---CGU- -5'
26271 3' -62 NC_005345.2 + 17455 0.69 0.231739
Target:  5'- uCGAgCGUGaacGCCCaACGGGCUGCGCc-- -3'
miRNA:   3'- -GCUgGCAC---UGGG-UGUCCGGCGCGcgu -5'
26271 3' -62 NC_005345.2 + 17256 0.67 0.318334
Target:  5'- cCGACCGggcggcaGGCgCCGCGguccuGGuCUGCGCGCGg -3'
miRNA:   3'- -GCUGGCa------CUG-GGUGU-----CC-GGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 16620 0.68 0.255419
Target:  5'- gCGGcCCG-GACCCGCgcagaucGGGCCGCcCGCc -3'
miRNA:   3'- -GCU-GGCaCUGGGUG-------UCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 14616 0.67 0.303567
Target:  5'- uCGACgGguacGCCCGCgAGGCCGCG-GCc -3'
miRNA:   3'- -GCUGgCac--UGGGUG-UCCGGCGCgCGu -5'
26271 3' -62 NC_005345.2 + 11709 0.68 0.282415
Target:  5'- aCGGCC--GACCaGCGGGCCGCcgccGCGUAc -3'
miRNA:   3'- -GCUGGcaCUGGgUGUCCGGCG----CGCGU- -5'
26271 3' -62 NC_005345.2 + 11459 0.71 0.164561
Target:  5'- gGACUGgcGGCCCACggccgacgacaucaGGGCCGCGCagGCGg -3'
miRNA:   3'- gCUGGCa-CUGGGUG--------------UCCGGCGCG--CGU- -5'
26271 3' -62 NC_005345.2 + 11086 0.66 0.341483
Target:  5'- gCGGCCuGUGGgUCACggucggaaguuGGGUCGCcGCGCAg -3'
miRNA:   3'- -GCUGG-CACUgGGUG-----------UCCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 10658 0.67 0.325917
Target:  5'- gGACCGcgGACCgGUGGGgCGCgGCGCGg -3'
miRNA:   3'- gCUGGCa-CUGGgUGUCCgGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 10411 0.66 0.341483
Target:  5'- ---gCGUGACgCUguGCgAGGUCGCGCGCGa -3'
miRNA:   3'- gcugGCACUG-GG--UG-UCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 10285 0.7 0.209401
Target:  5'- gCGGCCGgcgacaccgGACCCgaGCGGGaaGCGgGCAg -3'
miRNA:   3'- -GCUGGCa--------CUGGG--UGUCCggCGCgCGU- -5'
26271 3' -62 NC_005345.2 + 9721 0.66 0.341483
Target:  5'- -aGCCGc-GCCgCGCGGGCCGCGacCGCGc -3'
miRNA:   3'- gcUGGCacUGG-GUGUCCGGCGC--GCGU- -5'
26271 3' -62 NC_005345.2 + 9688 0.67 0.289333
Target:  5'- cCGGCUGcaGGCCgaucaGCGGGCCGcCGCGUg -3'
miRNA:   3'- -GCUGGCa-CUGGg----UGUCCGGC-GCGCGu -5'
26271 3' -62 NC_005345.2 + 9591 0.7 0.184113
Target:  5'- aCGACCGgccggGACCgGCcgcgGGGCCG-GUGCAc -3'
miRNA:   3'- -GCUGGCa----CUGGgUG----UCCGGCgCGCGU- -5'
26271 3' -62 NC_005345.2 + 9495 0.74 0.105238
Target:  5'- aGACCGagUGGCaguCGCGGGCCcuguGCGCGCAg -3'
miRNA:   3'- gCUGGC--ACUGg--GUGUCCGG----CGCGCGU- -5'
26271 3' -62 NC_005345.2 + 9264 0.69 0.225973
Target:  5'- gCGGCCGacaaGuCCCGCAugucGGCCGCgGCGUAc -3'
miRNA:   3'- -GCUGGCa---CuGGGUGU----CCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 8296 0.66 0.373357
Target:  5'- -cGCCGUGcuguuggGCgCCAU-GGCgGCGCGCAg -3'
miRNA:   3'- gcUGGCAC-------UG-GGUGuCCGgCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.