miRNA display CGI


Results 41 - 60 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 3' -62 NC_005345.2 + 27558 0.67 0.310884
Target:  5'- uCGGCuCGUcgGACCCcgGC-GGCCGgGCGCc -3'
miRNA:   3'- -GCUG-GCA--CUGGG--UGuCCGGCgCGCGu -5'
26271 3' -62 NC_005345.2 + 3308 0.69 0.220329
Target:  5'- aCGAUCGUcGCCCGCGccGCCGcCGUGCAc -3'
miRNA:   3'- -GCUGGCAcUGGGUGUc-CGGC-GCGCGU- -5'
26271 3' -62 NC_005345.2 + 39231 0.66 0.3742
Target:  5'- uGACCGUGuggcgggucgGCCCggACGGGaagcgcacguUCGUGCGCGg -3'
miRNA:   3'- gCUGGCAC----------UGGG--UGUCC----------GGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 27780 0.69 0.220329
Target:  5'- gCGcACCG--GCCUGCAGGCCGUgaugugGCGCAa -3'
miRNA:   3'- -GC-UGGCacUGGGUGUCCGGCG------CGCGU- -5'
26271 3' -62 NC_005345.2 + 18268 0.68 0.282415
Target:  5'- cCGcGCCGUcGCCCGCAcccGGagcacCCGCGCGCu -3'
miRNA:   3'- -GC-UGGCAcUGGGUGU---CC-----GGCGCGCGu -5'
26271 3' -62 NC_005345.2 + 17455 0.69 0.231739
Target:  5'- uCGAgCGUGaacGCCCaACGGGCUGCGCc-- -3'
miRNA:   3'- -GCUgGCAC---UGGG-UGUCCGGCGCGcgu -5'
26271 3' -62 NC_005345.2 + 17882 0.66 0.357579
Target:  5'- -cGCCGUGGCguagucgccgaUCACGGcGCCGCGCaCAc -3'
miRNA:   3'- gcUGGCACUG-----------GGUGUC-CGGCGCGcGU- -5'
26271 3' -62 NC_005345.2 + 38065 1.08 0.000242
Target:  5'- cCGACCGUGACCCACAGGCCGCGCGCAg -3'
miRNA:   3'- -GCUGGCACUGGGUGUCCGGCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 17534 0.8 0.034564
Target:  5'- gGACCGUgucgccaugcGAUCCGCGGGCCGCGCcgaGCAg -3'
miRNA:   3'- gCUGGCA----------CUGGGUGUCCGGCGCG---CGU- -5'
26271 3' -62 NC_005345.2 + 28917 0.76 0.069672
Target:  5'- uCGAUCGUG-CCaCGCAGGCgaUGCGCGCGg -3'
miRNA:   3'- -GCUGGCACuGG-GUGUCCG--GCGCGCGU- -5'
26271 3' -62 NC_005345.2 + 34499 0.69 0.24002
Target:  5'- cCGGCCG-GugCCgaggacgcggucgagGCGGGCCGCGgccuCGCGg -3'
miRNA:   3'- -GCUGGCaCugGG---------------UGUCCGGCGC----GCGU- -5'
26271 3' -62 NC_005345.2 + 8219 0.69 0.23408
Target:  5'- uCGGCCGUgcuguccggguagacGACCCGCAGGaCGUcgccggguucgaGCGCGg -3'
miRNA:   3'- -GCUGGCA---------------CUGGGUGUCCgGCG------------CGCGU- -5'
26271 3' -62 NC_005345.2 + 18157 0.69 0.231739
Target:  5'- aGGCCG-GACCgGgCGGGCCGaucaccucgaacCGCGCGc -3'
miRNA:   3'- gCUGGCaCUGGgU-GUCCGGC------------GCGCGU- -5'
26271 3' -62 NC_005345.2 + 16620 0.68 0.255419
Target:  5'- gCGGcCCG-GACCCGCgcagaucGGGCCGCcCGCc -3'
miRNA:   3'- -GCU-GGCaCUGGGUG-------UCCGGCGcGCGu -5'
26271 3' -62 NC_005345.2 + 46076 0.68 0.262448
Target:  5'- gCGGCCG-GGgCCGCcgGGGCCuGCGCGg- -3'
miRNA:   3'- -GCUGGCaCUgGGUG--UCCGG-CGCGCgu -5'
26271 3' -62 NC_005345.2 + 27131 0.67 0.289333
Target:  5'- gGACCGUccggcgGGCCCgGCAuGCCGCcGUGCGg -3'
miRNA:   3'- gCUGGCA------CUGGG-UGUcCGGCG-CGCGU- -5'
26271 3' -62 NC_005345.2 + 44207 0.66 0.341483
Target:  5'- gGucuCCGUGACcgCCACccGGCCGgaGCGCAc -3'
miRNA:   3'- gCu--GGCACUG--GGUGu-CCGGCg-CGCGU- -5'
26271 3' -62 NC_005345.2 + 17656 0.66 0.341483
Target:  5'- aCGACCGUG-UUCGCgGGGCCGCcgaucCGCu -3'
miRNA:   3'- -GCUGGCACuGGGUG-UCCGGCGc----GCGu -5'
26271 3' -62 NC_005345.2 + 28621 0.66 0.349465
Target:  5'- cCGGgCGUGuCgCCGCAGGCCGaucccgGgGCAg -3'
miRNA:   3'- -GCUgGCACuG-GGUGUCCGGCg-----CgCGU- -5'
26271 3' -62 NC_005345.2 + 41798 0.66 0.349465
Target:  5'- cCGGCUGcGcCaCCGCGGGCCacaccGCGUGCGa -3'
miRNA:   3'- -GCUGGCaCuG-GGUGUCCGG-----CGCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.