miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26271 5' -53.9 NC_005345.2 + 36372 0.66 0.776177
Target:  5'- gCGUACGCGGGcgcgcuccgcGGCcgCGGcGUGUGGGa -3'
miRNA:   3'- -GCGUGCGUCU----------UUGaaGCC-CACGCUCa -5'
26271 5' -53.9 NC_005345.2 + 35749 0.66 0.765886
Target:  5'- uGCgGCGCAGGAcgaACcggCGGG-GCGGGg -3'
miRNA:   3'- gCG-UGCGUCUU---UGaa-GCCCaCGCUCa -5'
26271 5' -53.9 NC_005345.2 + 31758 0.66 0.734202
Target:  5'- uGCGgGguGcgaguGCgucUCGGGUGCGGGg -3'
miRNA:   3'- gCGUgCguCuu---UGa--AGCCCACGCUCa -5'
26271 5' -53.9 NC_005345.2 + 9963 0.66 0.734202
Target:  5'- uCGCGCGCGGuGAGCUcguguaggcgUCGucauGGUGCGAc- -3'
miRNA:   3'- -GCGUGCGUC-UUUGA----------AGC----CCACGCUca -5'
26271 5' -53.9 NC_005345.2 + 23241 0.67 0.712527
Target:  5'- aCGCGCGC-GAGGCcUCgcaggccgagaaGGGggGCGAGUg -3'
miRNA:   3'- -GCGUGCGuCUUUGaAG------------CCCa-CGCUCA- -5'
26271 5' -53.9 NC_005345.2 + 30668 0.67 0.70156
Target:  5'- uGCcgaACGCGGcgagcauCUUCGGGUcGCGGGa -3'
miRNA:   3'- gCG---UGCGUCuuu----GAAGCCCA-CGCUCa -5'
26271 5' -53.9 NC_005345.2 + 12438 0.67 0.70156
Target:  5'- gCGuCGCGCGGGcuaccucgcgcAGCUcgCGGGgcagGCGAGg -3'
miRNA:   3'- -GC-GUGCGUCU-----------UUGAa-GCCCa---CGCUCa -5'
26271 5' -53.9 NC_005345.2 + 35306 0.67 0.690524
Target:  5'- cCGCgaGCGUGGGGACc-CGGGuUGCGGGg -3'
miRNA:   3'- -GCG--UGCGUCUUUGaaGCCC-ACGCUCa -5'
26271 5' -53.9 NC_005345.2 + 39592 0.67 0.690524
Target:  5'- gGUGCGCGGGGACUacgaggggcagcUCGGcGUGUGGa- -3'
miRNA:   3'- gCGUGCGUCUUUGA------------AGCC-CACGCUca -5'
26271 5' -53.9 NC_005345.2 + 37574 0.67 0.664937
Target:  5'- gCGgGCGCAGGcgGGCUgcaggCGGGcgaccggcucgcguUGCGAGUc -3'
miRNA:   3'- -GCgUGCGUCU--UUGAa----GCCC--------------ACGCUCA- -5'
26271 5' -53.9 NC_005345.2 + 31888 0.68 0.657109
Target:  5'- gGUGCGguGAG--UUCGGGgaucgGCGGGUg -3'
miRNA:   3'- gCGUGCguCUUugAAGCCCa----CGCUCA- -5'
26271 5' -53.9 NC_005345.2 + 16877 0.68 0.657109
Target:  5'- aCGCGCGCGGGuccgcCUUCGGaaccuugaccGUGCGcGUg -3'
miRNA:   3'- -GCGUGCGUCUuu---GAAGCC----------CACGCuCA- -5'
26271 5' -53.9 NC_005345.2 + 38238 0.68 0.634694
Target:  5'- aCGCGCggaccgguGCAGGcgugaucgauGACgugCGGGUGCGGGc -3'
miRNA:   3'- -GCGUG--------CGUCU----------UUGaa-GCCCACGCUCa -5'
26271 5' -53.9 NC_005345.2 + 9571 0.68 0.612268
Target:  5'- cCGCaacGCGCGGAAGgUaugCGGGgcgUGCGAGg -3'
miRNA:   3'- -GCG---UGCGUCUUUgAa--GCCC---ACGCUCa -5'
26271 5' -53.9 NC_005345.2 + 31448 0.69 0.601077
Target:  5'- aGCGCGgGugcGAGGCgccgGGGUGCGGGUg -3'
miRNA:   3'- gCGUGCgU---CUUUGaag-CCCACGCUCA- -5'
26271 5' -53.9 NC_005345.2 + 31194 0.69 0.589914
Target:  5'- gGCGCgGCGGguGCggCGGGUGCGcacccgGGUg -3'
miRNA:   3'- gCGUG-CGUCuuUGaaGCCCACGC------UCA- -5'
26271 5' -53.9 NC_005345.2 + 31260 0.71 0.451006
Target:  5'- gCGCACuCGGguGCg-CGGGUGCGGGg -3'
miRNA:   3'- -GCGUGcGUCuuUGaaGCCCACGCUCa -5'
26271 5' -53.9 NC_005345.2 + 31943 0.72 0.402422
Target:  5'- gGCGggUGCGGguGCgggugCGGGUGCGGGUg -3'
miRNA:   3'- gCGU--GCGUCuuUGaa---GCCCACGCUCA- -5'
26271 5' -53.9 NC_005345.2 + 31720 0.74 0.335266
Target:  5'- gGUGCGCGGAcgggguucgggugcACcUCGGGUGCGGGUg -3'
miRNA:   3'- gCGUGCGUCUu-------------UGaAGCCCACGCUCA- -5'
26271 5' -53.9 NC_005345.2 + 30870 0.84 0.070531
Target:  5'- aGCGCGCGGguGCUcCGGGUGCGGGc -3'
miRNA:   3'- gCGUGCGUCuuUGAaGCCCACGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.