Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26273 | 3' | -54.9 | NC_005345.2 | + | 11817 | 0.67 | 0.655566 |
Target: 5'- -cGGCGuucgacaacCGGAccgUGGGCGAggUCGACg -3' miRNA: 3'- caCCGCua-------GUCU---ACCCGCUagAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 34993 | 0.68 | 0.555519 |
Target: 5'- aUGGuCGGUCugc-GGGCGGUCggCGACg -3' miRNA: 3'- cACC-GCUAGucuaCCCGCUAGa-GCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 30381 | 0.68 | 0.5665 |
Target: 5'- -cGGCGGgcgCAGGUcGaGGCGuacCUCGACg -3' miRNA: 3'- caCCGCUa--GUCUA-C-CCGCua-GAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 21320 | 0.68 | 0.577535 |
Target: 5'- cGUGaGCGG-CGGAUGGGuCGAcagcgaUCGACg -3' miRNA: 3'- -CAC-CGCUaGUCUACCC-GCUag----AGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 42294 | 0.68 | 0.577535 |
Target: 5'- -cGGCGcGUC--GUGGGCGuccCUCGACa -3' miRNA: 3'- caCCGC-UAGucUACCCGCua-GAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 22690 | 0.67 | 0.610884 |
Target: 5'- cGUGGCGGUgaAGcgGGGCGG-CgugUGGCa -3' miRNA: 3'- -CACCGCUAg-UCuaCCCGCUaGa--GCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 36528 | 0.67 | 0.622051 |
Target: 5'- cUGGCGu--GGGUGGGCGAaCgCGGCc -3' miRNA: 3'- cACCGCuagUCUACCCGCUaGaGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 37582 | 0.67 | 0.633227 |
Target: 5'- -aGGCGGgcugCAGgcGGGCGAccggCUCG-Cg -3' miRNA: 3'- caCCGCUa---GUCuaCCCGCUa---GAGCuG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 12700 | 0.67 | 0.655566 |
Target: 5'- aGUGGCGGU--GGUGGGCGAUgcagcccgugUUCGcCg -3' miRNA: 3'- -CACCGCUAguCUACCCGCUA----------GAGCuG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 32773 | 0.69 | 0.484963 |
Target: 5'- gGUGGCGGcgCAGAgcggcgacgccgcGGCGAUgCUCGGCg -3' miRNA: 3'- -CACCGCUa-GUCUac-----------CCGCUA-GAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 43683 | 0.72 | 0.356997 |
Target: 5'- gGUGGCuGAUCAGccucgccgcGUGGGCcGGcCUCGACc -3' miRNA: 3'- -CACCG-CUAGUC---------UACCCG-CUaGAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 38517 | 0.73 | 0.305577 |
Target: 5'- aUGGCGAgccccgGGGUGGGCccguaccgacagaaGGUCUCGGCg -3' miRNA: 3'- cACCGCUag----UCUACCCG--------------CUAGAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 32117 | 0.67 | 0.633227 |
Target: 5'- -gGGCaGcgCGGGUgcgaGGGCGAUCgccUCGGCg -3' miRNA: 3'- caCCG-CuaGUCUA----CCCGCUAG---AGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 5593 | 0.67 | 0.598623 |
Target: 5'- -aGGCGGUCGGcgagcuuGUcGGCGAcgagCUCGGCg -3' miRNA: 3'- caCCGCUAGUC-------UAcCCGCUa---GAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 3792 | 0.68 | 0.5665 |
Target: 5'- cGUGGCGAUCAcgucGAcGGGCaGAUCgaGGCc -3' miRNA: 3'- -CACCGCUAGU----CUaCCCG-CUAGagCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 43514 | 0.68 | 0.5665 |
Target: 5'- gGUGcCGAUCGGGUcGGCGAUCaccgcgUCGGCc -3' miRNA: 3'- -CACcGCUAGUCUAcCCGCUAG------AGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 34630 | 0.69 | 0.491211 |
Target: 5'- -cGGCGGUCGGGgcGGuGCGcugcucccgGUCUCGGCc -3' miRNA: 3'- caCCGCUAGUCUa-CC-CGC---------UAGAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 15843 | 0.7 | 0.470533 |
Target: 5'- -gGGCGcgggcccgcUCGcGGUGGGCGAgcagCUCGGCg -3' miRNA: 3'- caCCGCu--------AGU-CUACCCGCUa---GAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 38599 | 0.83 | 0.066863 |
Target: 5'- cGUGGCGAgcgccUCGGAcacGGCGAUCUCGACg -3' miRNA: 3'- -CACCGCU-----AGUCUac-CCGCUAGAGCUG- -5' |
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26273 | 3' | -54.9 | NC_005345.2 | + | 36412 | 1.1 | 0.000771 |
Target: 5'- gGUGGCGAUCAGAUGGGCGAUCUCGACg -3' miRNA: 3'- -CACCGCUAGUCUACCCGCUAGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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