miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26274 3' -61.3 NC_005345.2 + 12649 0.66 0.407057
Target:  5'- gCCGGggCGCGgu-CGGCCgCCGuuggcguacccGCCGGg -3'
miRNA:   3'- gGGCCa-GCGUaacGCCGG-GGC-----------UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 13594 0.66 0.4053
Target:  5'- uCCCGGgcgaGCccgaagGCGGCCCCcaugagcuucgcGCCGGc -3'
miRNA:   3'- -GGGCCag--CGuaa---CGCCGGGGc-----------UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 13008 0.67 0.398319
Target:  5'- gCCGGcCGCAcggugGCGGUgugCCCacugcggcGACCGGa -3'
miRNA:   3'- gGGCCaGCGUaa---CGCCG---GGG--------CUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 30008 0.67 0.398319
Target:  5'- gUCCGGguggCGCGccaUGCGGCCCgCaGCCa- -3'
miRNA:   3'- -GGGCCa---GCGUa--ACGCCGGG-GcUGGcc -5'
26274 3' -61.3 NC_005345.2 + 17996 0.67 0.398319
Target:  5'- uCCCGuGUCGa-----GGCCUCGACCGc -3'
miRNA:   3'- -GGGC-CAGCguaacgCCGGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 7535 0.67 0.398319
Target:  5'- -gCGGUCGUggUGCuGaUCCCGACCaGGu -3'
miRNA:   3'- ggGCCAGCGuaACGcC-GGGGCUGG-CC- -5'
26274 3' -61.3 NC_005345.2 + 39509 0.67 0.398319
Target:  5'- gCCCGGgUGCccgaGUGGaCCCGGCCGa -3'
miRNA:   3'- -GGGCCaGCGuaa-CGCCgGGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 23316 0.67 0.397452
Target:  5'- cCUCGGUcCGCGUcgggUGCGcGCcgacgagcauguaCCCGGCCGa -3'
miRNA:   3'- -GGGCCA-GCGUA----ACGC-CG-------------GGGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 36518 0.67 0.396586
Target:  5'- cCCCGGcgaacUgGCGUgggugggcgaacGCGGCCCCGAgcucgugcgcuUCGGg -3'
miRNA:   3'- -GGGCC-----AgCGUAa-----------CGCCGGGGCU-----------GGCC- -5'
26274 3' -61.3 NC_005345.2 + 42855 0.67 0.389702
Target:  5'- aCCCGGcCGgGaugaagGCGGCCCCGcacguGCUGu -3'
miRNA:   3'- -GGGCCaGCgUaa----CGCCGGGGC-----UGGCc -5'
26274 3' -61.3 NC_005345.2 + 46059 0.67 0.389702
Target:  5'- gCCCgagGGUCGaucagGCGGCCggggCCG-CCGGg -3'
miRNA:   3'- -GGG---CCAGCguaa-CGCCGG----GGCuGGCC- -5'
26274 3' -61.3 NC_005345.2 + 27154 0.67 0.389702
Target:  5'- gCCCGaGgCGCugcGCGGCguCCCG-CCGGa -3'
miRNA:   3'- -GGGC-CaGCGuaaCGCCG--GGGCuGGCC- -5'
26274 3' -61.3 NC_005345.2 + 37431 0.67 0.381209
Target:  5'- gUUGGUaCGCGgcgGCGGCCCgcugguCGGCCGu -3'
miRNA:   3'- gGGCCA-GCGUaa-CGCCGGG------GCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 9176 0.67 0.381209
Target:  5'- gCCGGUCGUG-UGCGaGCUgaUCGacGCCGGg -3'
miRNA:   3'- gGGCCAGCGUaACGC-CGG--GGC--UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 29904 0.67 0.376172
Target:  5'- aCCCGGUCGCGgucGcCGaGCaCCUcgaagagcaggggagGACCGGc -3'
miRNA:   3'- -GGGCCAGCGUaa-C-GC-CG-GGG---------------CUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 22212 0.67 0.372839
Target:  5'- gCCGGUCGCGcaGCGaaCCCGAcagcgcgucguaCCGGu -3'
miRNA:   3'- gGGCCAGCGUaaCGCcgGGGCU------------GGCC- -5'
26274 3' -61.3 NC_005345.2 + 4921 0.67 0.372839
Target:  5'- -gCGGcagcCGCAcgUGC-GCUCCGGCCGGg -3'
miRNA:   3'- ggGCCa---GCGUa-ACGcCGGGGCUGGCC- -5'
26274 3' -61.3 NC_005345.2 + 12580 0.67 0.372839
Target:  5'- uCCUcuUCGCuGUUGCGGCCgCGAUCGu -3'
miRNA:   3'- -GGGccAGCG-UAACGCCGGgGCUGGCc -5'
26274 3' -61.3 NC_005345.2 + 31189 0.67 0.372839
Target:  5'- aCUCGGgCGCGgcgggUGCGGCgggugcgcaCCCGggugcgGCCGGg -3'
miRNA:   3'- -GGGCCaGCGUa----ACGCCG---------GGGC------UGGCC- -5'
26274 3' -61.3 NC_005345.2 + 40068 0.67 0.372009
Target:  5'- -gCGGUCGCcggcgacgGCGGCCCgGAUaaagucgCGGa -3'
miRNA:   3'- ggGCCAGCGuaa-----CGCCGGGgCUG-------GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.