miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 3' -63.5 NC_005345.2 + 39419 0.67 0.287844
Target:  5'- gCGUCgGCGcGGUCgcgGCCCgCGCGGcGCg -3'
miRNA:   3'- aGCGG-CGC-CCAGag-UGGGaGCGCC-CG- -5'
26275 3' -63.5 NC_005345.2 + 40768 0.67 0.287844
Target:  5'- cUCGUCGgGccGGUCg-GCCggCGCGGGCg -3'
miRNA:   3'- -AGCGGCgC--CCAGagUGGgaGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 1220 0.67 0.28716
Target:  5'- aCGCCGCgcgguacGGGUCccaUgGCUUUCcgGCGGGCu -3'
miRNA:   3'- aGCGGCG-------CCCAG---AgUGGGAG--CGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 11685 0.67 0.285796
Target:  5'- gCGCUGCucagcaGGGUCggcuuaggggucagaGCCUUCGUGGGUu -3'
miRNA:   3'- aGCGGCG------CCCAGag-------------UGGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 1795 0.67 0.28376
Target:  5'- cUCGCCacaccgcaCGGGcaaugaucuUCUucacugcugcucaccCGCCUUCGCGGGCa -3'
miRNA:   3'- -AGCGGc-------GCCC---------AGA---------------GUGGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 21331 0.67 0.281063
Target:  5'- -aGCuCGguCGGGUcCUCGCCCgUGCGcGGCu -3'
miRNA:   3'- agCG-GC--GCCCA-GAGUGGGaGCGC-CCG- -5'
26275 3' -63.5 NC_005345.2 + 17287 0.67 0.281063
Target:  5'- cUGCgCGCGGGUCuugUCGgCCggaCGGGCg -3'
miRNA:   3'- aGCG-GCGCCCAG---AGUgGGagcGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 16877 0.67 0.281063
Target:  5'- aCGCgCGCGGGUC-CGCCUUCGgaaccuugacCGuGCg -3'
miRNA:   3'- aGCG-GCGCCCAGaGUGGGAGC----------GCcCG- -5'
26275 3' -63.5 NC_005345.2 + 11273 0.67 0.281063
Target:  5'- cCGCCGCgaccguccGGGcCUgAgCCUCGCcGGCc -3'
miRNA:   3'- aGCGGCG--------CCCaGAgUgGGAGCGcCCG- -5'
26275 3' -63.5 NC_005345.2 + 4795 0.67 0.277056
Target:  5'- cUCGCCGCGGGuggggaaccgaaugcUCgggCACCgUgGCGGc- -3'
miRNA:   3'- -AGCGGCGCCC---------------AGa--GUGGgAgCGCCcg -5'
26275 3' -63.5 NC_005345.2 + 2360 0.67 0.27441
Target:  5'- -gGCgGCGcagcccGGUCgcgaCCUCGCGGGCc -3'
miRNA:   3'- agCGgCGC------CCAGagugGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 34730 0.67 0.273752
Target:  5'- uUCGCCguauaccGCGGGg-UgAUCCUCGCGGcgGCg -3'
miRNA:   3'- -AGCGG-------CGCCCagAgUGGGAGCGCC--CG- -5'
26275 3' -63.5 NC_005345.2 + 21615 0.67 0.267883
Target:  5'- aUGCCGCGGGUgaUCGCCgCgugCGCcucGGUg -3'
miRNA:   3'- aGCGGCGCCCAg-AGUGG-Ga--GCGc--CCG- -5'
26275 3' -63.5 NC_005345.2 + 37823 0.67 0.267883
Target:  5'- cUGCuCGCGGcG-CUCGCCUcacgGCGGGCc -3'
miRNA:   3'- aGCG-GCGCC-CaGAGUGGGag--CGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 1326 0.67 0.267883
Target:  5'- cCGCUGCGGGUC-CuCCaggGCGaGGCg -3'
miRNA:   3'- aGCGGCGCCCAGaGuGGgagCGC-CCG- -5'
26275 3' -63.5 NC_005345.2 + 8020 0.67 0.267883
Target:  5'- -aGCCGCcaGUCggaGCCCcguacCGCGGGCg -3'
miRNA:   3'- agCGGCGccCAGag-UGGGa----GCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 429 0.67 0.267883
Target:  5'- aUGCgGcCGGuGUCccgguucuUCA-CCUCGCGGGCg -3'
miRNA:   3'- aGCGgC-GCC-CAG--------AGUgGGAGCGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 34514 0.67 0.261483
Target:  5'- aUCGaCCGCGaGGUgCUCccggUCCUCGCgaaggucgGGGCg -3'
miRNA:   3'- -AGC-GGCGC-CCA-GAGu---GGGAGCG--------CCCG- -5'
26275 3' -63.5 NC_005345.2 + 23663 0.67 0.261483
Target:  5'- gCGCCGaccaGGGUCgCGgCCggucggGCGGGCc -3'
miRNA:   3'- aGCGGCg---CCCAGaGUgGGag----CGCCCG- -5'
26275 3' -63.5 NC_005345.2 + 32515 0.67 0.261483
Target:  5'- cUGCCgGCGGG-Cg-GCCCgaucugCGCGGGUc -3'
miRNA:   3'- aGCGG-CGCCCaGagUGGGa-----GCGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.