miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26275 5' -57.6 NC_005345.2 + 37328 0.67 0.495063
Target:  5'- cUCGCCCACGGuccGGUugucgaacgccgcgGCGuGcccgagcagcuuuGCGGCCUCg -3'
miRNA:   3'- -AGCGGGUGUCu--CCA--------------UGC-C-------------UGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 4805 0.67 0.488953
Target:  5'- aUCGCCCcccgGCAGcucggcgauuucGGGUACgccucgauGGGCGACCg- -3'
miRNA:   3'- -AGCGGG----UGUC------------UCCAUG--------CCUGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 6645 0.67 0.488953
Target:  5'- cCGCgCGgAGAGGgcACGGGCGAacguggcgaucuCCUCg -3'
miRNA:   3'- aGCGgGUgUCUCCa-UGCCUGCU------------GGAG- -5'
26275 5' -57.6 NC_005345.2 + 19739 0.67 0.488953
Target:  5'- aCGCCCGCGaggcgaccGAGGccgagGCGG-CGGCCg- -3'
miRNA:   3'- aGCGGGUGU--------CUCCa----UGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 30870 0.67 0.487938
Target:  5'- -aGCgCGCGGgugcuccGGGUGCGGGCGACg-- -3'
miRNA:   3'- agCGgGUGUC-------UCCAUGCCUGCUGgag -5'
26275 5' -57.6 NC_005345.2 + 47349 0.67 0.478849
Target:  5'- uUCaCCUACaaGGGGGUACGGucggucgaGCGGCCUg -3'
miRNA:   3'- -AGcGGGUG--UCUCCAUGCC--------UGCUGGAg -5'
26275 5' -57.6 NC_005345.2 + 12461 0.67 0.478849
Target:  5'- -aGCUCGCGGggcAGGcgagGCGcGACGAUCUCg -3'
miRNA:   3'- agCGGGUGUC---UCCa---UGC-CUGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 12628 0.68 0.469844
Target:  5'- uUCGCCCACccacgccaguucgccGGGGcGCGGuCGGCCg- -3'
miRNA:   3'- -AGCGGGUGu--------------CUCCaUGCCuGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 19067 0.68 0.468849
Target:  5'- gUCGCCUACGGGGucuacgcgaucGUGCGGGCcguGCCg- -3'
miRNA:   3'- -AGCGGGUGUCUC-----------CAUGCCUGc--UGGag -5'
26275 5' -57.6 NC_005345.2 + 48707 0.68 0.468849
Target:  5'- cUCGCCCGC-GAGGUGaagaacCGGGacacCGGCCg- -3'
miRNA:   3'- -AGCGGGUGuCUCCAU------GCCU----GCUGGag -5'
26275 5' -57.6 NC_005345.2 + 33031 0.68 0.468849
Target:  5'- cUCGgCCGCGG-GGUGCGGucCGGCUc- -3'
miRNA:   3'- -AGCgGGUGUCuCCAUGCCu-GCUGGag -5'
26275 5' -57.6 NC_005345.2 + 24352 0.68 0.456011
Target:  5'- gUCGCCCggcugcaccaccuuGCcGAGGU-CGGACGACg-- -3'
miRNA:   3'- -AGCGGG--------------UGuCUCCAuGCCUGCUGgag -5'
26275 5' -57.6 NC_005345.2 + 16171 0.68 0.449177
Target:  5'- cCGCCUGCGccGAGGacuacGCGGACGcggccggcguccGCCUCg -3'
miRNA:   3'- aGCGGGUGU--CUCCa----UGCCUGC------------UGGAG- -5'
26275 5' -57.6 NC_005345.2 + 19397 0.68 0.449177
Target:  5'- gUGCCCACccgcGGGGUGCuccguGACGcCCUCu -3'
miRNA:   3'- aGCGGGUGu---CUCCAUGc----CUGCuGGAG- -5'
26275 5' -57.6 NC_005345.2 + 37771 0.68 0.439514
Target:  5'- cUCGCCCGCAG----GCGGccGCGACCg- -3'
miRNA:   3'- -AGCGGGUGUCuccaUGCC--UGCUGGag -5'
26275 5' -57.6 NC_005345.2 + 7403 0.68 0.439514
Target:  5'- -gGCCCGCAu-GGUcGCGuuCGACCUCg -3'
miRNA:   3'- agCGGGUGUcuCCA-UGCcuGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 8509 0.68 0.439514
Target:  5'- gCGUCCacugGCAGuGG-ACGGGCcGCCUCg -3'
miRNA:   3'- aGCGGG----UGUCuCCaUGCCUGcUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 30375 0.68 0.438554
Target:  5'- -aGCCCGCGGcgggcgcAGGU-CGaGGCGuACCUCg -3'
miRNA:   3'- agCGGGUGUC-------UCCAuGC-CUGC-UGGAG- -5'
26275 5' -57.6 NC_005345.2 + 46180 0.68 0.42997
Target:  5'- aUCGCCUACAa--GUACGGcgcgaACGACCUUu -3'
miRNA:   3'- -AGCGGGUGUcucCAUGCC-----UGCUGGAG- -5'
26275 5' -57.6 NC_005345.2 + 5834 0.68 0.420548
Target:  5'- cUCGCCCGCu--GGUuccggcugugGCGcGuCGACCUCg -3'
miRNA:   3'- -AGCGGGUGucuCCA----------UGC-CuGCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.