miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26276 3' -64.4 NC_005345.2 + 29367 0.66 0.287844
Target:  5'- gUAGCCGAG-CCacggCUCGGUGUcguacGGCUCGg -3'
miRNA:   3'- -GUCGGCUCaGG----GAGCCGCAc----CCGGGC- -5'
26276 3' -64.4 NC_005345.2 + 44500 0.66 0.287844
Target:  5'- aCGGCCGAGgcaCagcaGGCGacGGCCCGg -3'
miRNA:   3'- -GUCGGCUCag-Ggag-CCGCacCCGGGC- -5'
26276 3' -64.4 NC_005345.2 + 17807 0.66 0.287844
Target:  5'- gAGCCGGaucaUCCCUgcCGGCGUGccccuucccGCCCGg -3'
miRNA:   3'- gUCGGCUc---AGGGA--GCCGCACc--------CGGGC- -5'
26276 3' -64.4 NC_005345.2 + 47925 0.66 0.287844
Target:  5'- aAGCCauGGGaCCCguaccgcgCGGCGUGG-CCCGc -3'
miRNA:   3'- gUCGG--CUCaGGGa-------GCCGCACCcGGGC- -5'
26276 3' -64.4 NC_005345.2 + 5073 0.66 0.287844
Target:  5'- gCAGCUGcAG-CCCaUCGGCGcucggcGGGUCCa -3'
miRNA:   3'- -GUCGGC-UCaGGG-AGCCGCa-----CCCGGGc -5'
26276 3' -64.4 NC_005345.2 + 27853 0.66 0.281063
Target:  5'- uGGCCGA--UCCUCGGCG-GcGCCCc -3'
miRNA:   3'- gUCGGCUcaGGGAGCCGCaCcCGGGc -5'
26276 3' -64.4 NC_005345.2 + 26130 0.66 0.276392
Target:  5'- uGGUCGAGUUcgcccggaugcccgaCCUCGGCGaGGaccccgaGCCCGa -3'
miRNA:   3'- gUCGGCUCAG---------------GGAGCCGCaCC-------CGGGC- -5'
26276 3' -64.4 NC_005345.2 + 4346 0.66 0.27441
Target:  5'- gAGCCgGGGUCcugCCUCgGGCGggcGGGCCg- -3'
miRNA:   3'- gUCGG-CUCAG---GGAG-CCGCa--CCCGGgc -5'
26276 3' -64.4 NC_005345.2 + 20163 0.66 0.264028
Target:  5'- aGGCaCGAGcCCCgccgcauuccgaugCGGCG-GGGCCUu -3'
miRNA:   3'- gUCG-GCUCaGGGa-------------GCCGCaCCCGGGc -5'
26276 3' -64.4 NC_005345.2 + 32968 0.66 0.261483
Target:  5'- cCGGCCGcGUCcgcguaguCCUCGGCGcagGcGGCCgGg -3'
miRNA:   3'- -GUCGGCuCAG--------GGAGCCGCa--C-CCGGgC- -5'
26276 3' -64.4 NC_005345.2 + 20315 0.66 0.255207
Target:  5'- cCGGCCGcGUCCa-CGGCGaUGGGCa-- -3'
miRNA:   3'- -GUCGGCuCAGGgaGCCGC-ACCCGggc -5'
26276 3' -64.4 NC_005345.2 + 16878 0.66 0.255207
Target:  5'- aCGGCCGAG-CgUggCGGCGgaaGGcGCCCGu -3'
miRNA:   3'- -GUCGGCUCaGgGa-GCCGCa--CC-CGGGC- -5'
26276 3' -64.4 NC_005345.2 + 29784 0.66 0.255207
Target:  5'- -cGCCGAGUCCCUCGaagacgacuacGCGcucGCCCc -3'
miRNA:   3'- guCGGCUCAGGGAGC-----------CGCaccCGGGc -5'
26276 3' -64.4 NC_005345.2 + 10612 0.67 0.249056
Target:  5'- -cGCCGAGaCCUucugUCGGUacGGGCCCa -3'
miRNA:   3'- guCGGCUCaGGG----AGCCGcaCCCGGGc -5'
26276 3' -64.4 NC_005345.2 + 30017 0.67 0.248447
Target:  5'- cCGGCCGAgGUCgCCgagCGgaucggcgcccacGCGUGGGCCg- -3'
miRNA:   3'- -GUCGGCU-CAG-GGa--GC-------------CGCACCCGGgc -5'
26276 3' -64.4 NC_005345.2 + 4453 0.67 0.243027
Target:  5'- -uGUgGAGgCUC-CGGCGgGGGCCCGg -3'
miRNA:   3'- guCGgCUCaGGGaGCCGCaCCCGGGC- -5'
26276 3' -64.4 NC_005345.2 + 43678 0.67 0.243027
Target:  5'- -cGCCGGGUggcugaucagCCUCGccGCGUGGGCCgGc -3'
miRNA:   3'- guCGGCUCAg---------GGAGC--CGCACCCGGgC- -5'
26276 3' -64.4 NC_005345.2 + 22408 0.67 0.241836
Target:  5'- -cGUCGAGUUCCUCGGCGaucacgucgagcGGGuaCCCa -3'
miRNA:   3'- guCGGCUCAGGGAGCCGCa-----------CCC--GGGc -5'
26276 3' -64.4 NC_005345.2 + 9637 0.67 0.237121
Target:  5'- uCGGCCGGGUCCaCUCGgGCacccGGGCaaCCa -3'
miRNA:   3'- -GUCGGCUCAGG-GAGC-CGca--CCCG--GGc -5'
26276 3' -64.4 NC_005345.2 + 29999 0.67 0.237121
Target:  5'- uCGGCCGGGgUCCgggUGGCGcgccaUGcGGCCCGc -3'
miRNA:   3'- -GUCGGCUCaGGGa--GCCGC-----AC-CCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.