miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26276 5' -56.9 NC_005345.2 + 31284 0.66 0.58987
Target:  5'- gGGCGG-GUGCGcGCC-ACGGggggaugucgccgggGCCCGGc -3'
miRNA:   3'- -UCGCCaCAUGCuCGGcUGCU---------------UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 17395 0.66 0.585548
Target:  5'- cGCGGUGguccGCGGGuaGGCGAacgucACCCu- -3'
miRNA:   3'- uCGCCACa---UGCUCggCUGCU-----UGGGcu -5'
26276 5' -56.9 NC_005345.2 + 20401 0.66 0.585548
Target:  5'- cGCGGgcgccUGCaGGGCCGAguacagGAACCCGAc -3'
miRNA:   3'- uCGCCac---AUG-CUCGGCUg-----CUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 9510 0.66 0.585548
Target:  5'- cGCGGgcccUGUGCGcGCaGACcGACCCGGa -3'
miRNA:   3'- uCGCC----ACAUGCuCGgCUGcUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 20491 0.66 0.585548
Target:  5'- cGCGGUGaucuuGCCGAgCGGaauGCCCGAc -3'
miRNA:   3'- uCGCCACaugcuCGGCU-GCU---UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 31471 0.66 0.584468
Target:  5'- uGCgGGUGUgaggcggGCGAGCgCGGCGuagGCgCCGAg -3'
miRNA:   3'- uCG-CCACA-------UGCUCG-GCUGCu--UG-GGCU- -5'
26276 5' -56.9 NC_005345.2 + 20862 0.67 0.574771
Target:  5'- uGGCGG-GcGCGAGCuuguCGACGAGCUucgCGAu -3'
miRNA:   3'- -UCGCCaCaUGCUCG----GCUGCUUGG---GCU- -5'
26276 5' -56.9 NC_005345.2 + 44660 0.67 0.574771
Target:  5'- uGCGGUGggcACG-GCuCGuCGAGCCgGAc -3'
miRNA:   3'- uCGCCACa--UGCuCG-GCuGCUUGGgCU- -5'
26276 5' -56.9 NC_005345.2 + 12702 0.67 0.571546
Target:  5'- uGGCGGUGguggGCGAugcagcccguguucGCCGuCGAgaucGCCCa- -3'
miRNA:   3'- -UCGCCACa---UGCU--------------CGGCuGCU----UGGGcu -5'
26276 5' -56.9 NC_005345.2 + 36488 0.67 0.56404
Target:  5'- cGGCGG-GUACGccaacggcGGCCGACcgcgcCCCGGc -3'
miRNA:   3'- -UCGCCaCAUGC--------UCGGCUGcuu--GGGCU- -5'
26276 5' -56.9 NC_005345.2 + 34516 0.67 0.56404
Target:  5'- cGCGGUcgagGCGGGCCGcggccucgcggGCGuACCCGu -3'
miRNA:   3'- uCGCCAca--UGCUCGGC-----------UGCuUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 17046 0.67 0.56404
Target:  5'- cGCGcUGccCGAGcCCGAgguCGAACCCGAg -3'
miRNA:   3'- uCGCcACauGCUC-GGCU---GCUUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 22705 0.67 0.557627
Target:  5'- gGGCGGcgUGUGgcaugacgucaucguCGAGCCGugGAcgAUCCGc -3'
miRNA:   3'- -UCGCC--ACAU---------------GCUCGGCugCU--UGGGCu -5'
26276 5' -56.9 NC_005345.2 + 648 0.67 0.553363
Target:  5'- uGCGGcGUgaGCGGGaCCGuGCGgAACCCGGc -3'
miRNA:   3'- uCGCCaCA--UGCUC-GGC-UGC-UUGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 40056 0.67 0.553363
Target:  5'- cGCGacGUGCGGgcggucGCCGGCGAcggcgGCCCGGa -3'
miRNA:   3'- uCGCcaCAUGCU------CGGCUGCU-----UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 38872 0.67 0.553363
Target:  5'- -cCGGUGUcgccggccGCGAGUgGACGGcagagaucggcGCCCGGg -3'
miRNA:   3'- ucGCCACA--------UGCUCGgCUGCU-----------UGGGCU- -5'
26276 5' -56.9 NC_005345.2 + 34405 0.67 0.553363
Target:  5'- gGGCaaGGUGgGCGGcGCCG-CGGACCgGAu -3'
miRNA:   3'- -UCG--CCACaUGCU-CGGCuGCUUGGgCU- -5'
26276 5' -56.9 NC_005345.2 + 43938 0.67 0.553363
Target:  5'- cGGC-GUGUAgcgcCGGGCCGGCcGugCCGAu -3'
miRNA:   3'- -UCGcCACAU----GCUCGGCUGcUugGGCU- -5'
26276 5' -56.9 NC_005345.2 + 48568 0.67 0.542747
Target:  5'- cGCGGa-UGCGGgcGCCGAUGAGCUCGc -3'
miRNA:   3'- uCGCCacAUGCU--CGGCUGCUUGGGCu -5'
26276 5' -56.9 NC_005345.2 + 31207 0.67 0.542747
Target:  5'- cGGCGG-GUGCGcacccgggugcGGCCGgguguacgGCGggUCCGGg -3'
miRNA:   3'- -UCGCCaCAUGC-----------UCGGC--------UGCuuGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.