miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 3' -54.9 NC_005345.2 + 23677 0.66 0.689117
Target:  5'- cGCGGCCgG-UCGGGCg-GGCCGAgCGCa -3'
miRNA:   3'- -CGUCGGgCgAGUUUGagCUGGCU-GUG- -5'
26277 3' -54.9 NC_005345.2 + 10225 0.66 0.689117
Target:  5'- aGCAcgacCCCGUcgaggUCAAGCUCGAcaCCGGgGCa -3'
miRNA:   3'- -CGUc---GGGCG-----AGUUUGAGCU--GGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 10180 0.66 0.689117
Target:  5'- gGUGGUCgCGC-CGAuCUCGACCG-CGCu -3'
miRNA:   3'- -CGUCGG-GCGaGUUuGAGCUGGCuGUG- -5'
26277 3' -54.9 NC_005345.2 + 43850 0.66 0.678102
Target:  5'- --uGCCCGgUCGAcgggGCgUCGGCCGGgACu -3'
miRNA:   3'- cguCGGGCgAGUU----UG-AGCUGGCUgUG- -5'
26277 3' -54.9 NC_005345.2 + 13070 0.66 0.678102
Target:  5'- uCAGCCCGC-CGAGCaUCuuccccggGACCuGCGCg -3'
miRNA:   3'- cGUCGGGCGaGUUUG-AG--------CUGGcUGUG- -5'
26277 3' -54.9 NC_005345.2 + 3398 0.66 0.678102
Target:  5'- gGCGGCgaGUUCGGGCUgagagaggCGGCgGGCGCg -3'
miRNA:   3'- -CGUCGggCGAGUUUGA--------GCUGgCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 31117 0.66 0.678102
Target:  5'- cGUGGCCgCGUUCcugcGCUCGcCCGGCGu -3'
miRNA:   3'- -CGUCGG-GCGAGuu--UGAGCuGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 13456 0.66 0.678102
Target:  5'- gGCAGCuuGCcCAGAC-CGAcgaacCCGGCGa -3'
miRNA:   3'- -CGUCGggCGaGUUUGaGCU-----GGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 48181 0.66 0.678102
Target:  5'- cCGGgCCGCcgUCAAGgaCGGCCGGCGu -3'
miRNA:   3'- cGUCgGGCG--AGUUUgaGCUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 38701 0.66 0.678102
Target:  5'- aCAGCUCGUUCGAGCagggggUCG-CCGGCu- -3'
miRNA:   3'- cGUCGGGCGAGUUUG------AGCuGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 31495 0.66 0.676998
Target:  5'- gGCGGcCCCGCgaaCAcggucguGAC-CGACCGGcCGCg -3'
miRNA:   3'- -CGUC-GGGCGa--GU-------UUGaGCUGGCU-GUG- -5'
26277 3' -54.9 NC_005345.2 + 37032 0.67 0.667043
Target:  5'- aGCGGCaCCGggCGAGCcgggaucCGGCCGGCGg -3'
miRNA:   3'- -CGUCG-GGCgaGUUUGa------GCUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 18591 0.67 0.667043
Target:  5'- aCAGCCCGC-CGucCUCG-CCGAgGg -3'
miRNA:   3'- cGUCGGGCGaGUuuGAGCuGGCUgUg -5'
26277 3' -54.9 NC_005345.2 + 5269 0.67 0.667043
Target:  5'- uGCAGCgggacgcgcuCCGCcgCGGAgUccCGGCCGACGCc -3'
miRNA:   3'- -CGUCG----------GGCGa-GUUUgA--GCUGGCUGUG- -5'
26277 3' -54.9 NC_005345.2 + 23483 0.67 0.667043
Target:  5'- cGCAGgCCGaUCAcuucGGCUCGuCCGACu- -3'
miRNA:   3'- -CGUCgGGCgAGU----UUGAGCuGGCUGug -5'
26277 3' -54.9 NC_005345.2 + 12257 0.67 0.667043
Target:  5'- aGCAgGCCCgGCUCGuuCg-GACCGuACGCc -3'
miRNA:   3'- -CGU-CGGG-CGAGUuuGagCUGGC-UGUG- -5'
26277 3' -54.9 NC_005345.2 + 4388 0.67 0.667043
Target:  5'- aCGGCgCCGCaUGAGCgCGAUCGACAa -3'
miRNA:   3'- cGUCG-GGCGaGUUUGaGCUGGCUGUg -5'
26277 3' -54.9 NC_005345.2 + 48506 0.67 0.667043
Target:  5'- aCGGuCCCGCUCAcGCcgcaGGCCGAggaCGCg -3'
miRNA:   3'- cGUC-GGGCGAGUuUGag--CUGGCU---GUG- -5'
26277 3' -54.9 NC_005345.2 + 39432 0.67 0.667043
Target:  5'- cGCGGCCCGCgc-GGCgCGGCUcACGCn -3'
miRNA:   3'- -CGUCGGGCGaguUUGaGCUGGcUGUG- -5'
26277 3' -54.9 NC_005345.2 + 38391 0.67 0.667043
Target:  5'- aCGGCCgGCagGGGCUCGGCguCGGCGa -3'
miRNA:   3'- cGUCGGgCGagUUUGAGCUG--GCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.