miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26277 5' -65 NC_005345.2 + 34576 0.66 0.252078
Target:  5'- uGuGUAGUgccgacaCGGCCGGGcccGUGCCGUaccGGGCg -3'
miRNA:   3'- gC-CGUCG-------GCCGGCUC---CACGGCG---UCCG- -5'
26277 5' -65 NC_005345.2 + 15808 0.66 0.252078
Target:  5'- gCGGCAcGCCGGCuacgccgcgaccgCGuGGagaugGgCGCGGGCc -3'
miRNA:   3'- -GCCGU-CGGCCG-------------GCuCCa----CgGCGUCCG- -5'
26277 5' -65 NC_005345.2 + 36338 0.66 0.246585
Target:  5'- aGGCgaaccGGCgGGCCGAgcggcucgggcgGGUcGuuGCGGGUg -3'
miRNA:   3'- gCCG-----UCGgCCGGCU------------CCA-CggCGUCCG- -5'
26277 5' -65 NC_005345.2 + 6340 0.66 0.246585
Target:  5'- gCGGCAGgCGGCCcaacuugGCCGCAuccgcaccGGCu -3'
miRNA:   3'- -GCCGUCgGCCGGcucca--CGGCGU--------CCG- -5'
26277 5' -65 NC_005345.2 + 4474 0.66 0.245981
Target:  5'- cCGGCGGCCGuGUccggcucgaCGAGccGUGCCcaccgcaGCAGGUc -3'
miRNA:   3'- -GCCGUCGGC-CG---------GCUC--CACGG-------CGUCCG- -5'
26277 5' -65 NC_005345.2 + 19765 0.66 0.242978
Target:  5'- gCGGCGGCCGaGCCGuacgacaccgaGCCGU-GGCu -3'
miRNA:   3'- -GCCGUCGGC-CGGCucca-------CGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 44873 0.66 0.240598
Target:  5'- gCGGCGGCCGcGUcgCGAGGcGCaGCAacguGGCc -3'
miRNA:   3'- -GCCGUCGGC-CG--GCUCCaCGgCGU----CCG- -5'
26277 5' -65 NC_005345.2 + 29507 0.66 0.240598
Target:  5'- aGGCGGCCGuGUCGcacaUGCgGCAGuGCg -3'
miRNA:   3'- gCCGUCGGC-CGGCucc-ACGgCGUC-CG- -5'
26277 5' -65 NC_005345.2 + 8823 0.66 0.240598
Target:  5'- ----cGCCGGCCGGGcucgucUGCCGC-GGCu -3'
miRNA:   3'- gccguCGGCCGGCUCc-----ACGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 7095 0.66 0.240598
Target:  5'- cCGaGCAGCCGGUaacuCGGGcUGCCgguGCGGGg -3'
miRNA:   3'- -GC-CGUCGGCCG----GCUCcACGG---CGUCCg -5'
26277 5' -65 NC_005345.2 + 31747 0.66 0.238826
Target:  5'- uCGGguGCgGGUgCGGGGUGCgagugcgucucgggUGCGGGg -3'
miRNA:   3'- -GCCguCGgCCG-GCUCCACG--------------GCGUCCg -5'
26277 5' -65 NC_005345.2 + 34964 0.66 0.234734
Target:  5'- uCGGCGGCguccUGGUcguCGAGG-GCgUGCAGGUa -3'
miRNA:   3'- -GCCGUCG----GCCG---GCUCCaCG-GCGUCCG- -5'
26277 5' -65 NC_005345.2 + 16350 0.66 0.234734
Target:  5'- uCGGCGGCaucgCGGCCGGc--GCCGC-GGUg -3'
miRNA:   3'- -GCCGUCG----GCCGGCUccaCGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 8703 0.66 0.234734
Target:  5'- gGGCGGcCCGGCUGuGGccgacucguccGUCGCcGGCg -3'
miRNA:   3'- gCCGUC-GGCCGGCuCCa----------CGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 43863 0.66 0.228989
Target:  5'- gGGC-GUCGGCCGGGacuCCGC-GGCg -3'
miRNA:   3'- gCCGuCGGCCGGCUCcacGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 1570 0.66 0.228989
Target:  5'- gCGGCAGUCGccGCCGuGGggGCCGuCAcGaGCg -3'
miRNA:   3'- -GCCGUCGGC--CGGCuCCa-CGGC-GU-C-CG- -5'
26277 5' -65 NC_005345.2 + 18956 0.66 0.228989
Target:  5'- cCGGCAGgguCCGaagcgcucGCCGcauGGGUcGCCGCuGGCc -3'
miRNA:   3'- -GCCGUC---GGC--------CGGC---UCCA-CGGCGuCCG- -5'
26277 5' -65 NC_005345.2 + 16123 0.66 0.228989
Target:  5'- -aGCGGCCGGCCGGcGGcGUC-CcGGCg -3'
miRNA:   3'- gcCGUCGGCCGGCU-CCaCGGcGuCCG- -5'
26277 5' -65 NC_005345.2 + 28854 0.66 0.228989
Target:  5'- -cGCAGUCGuCCGGGG-GCUcuucgGCGGGCa -3'
miRNA:   3'- gcCGUCGGCcGGCUCCaCGG-----CGUCCG- -5'
26277 5' -65 NC_005345.2 + 39861 0.67 0.223364
Target:  5'- ----cGCCGGCCgcGAGGUacGCCGC-GGCc -3'
miRNA:   3'- gccguCGGCCGG--CUCCA--CGGCGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.