miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26278 3' -57.1 NC_005345.2 + 23181 0.68 0.493809
Target:  5'- cCGACgcgCUCGGGUUCGACC--GGCUgCGg -3'
miRNA:   3'- -GCUG---GAGCCCAAGCUGGagCUGGaGC- -5'
26278 3' -57.1 NC_005345.2 + 4289 0.68 0.493809
Target:  5'- uCGGgCUCGGGcugcggUUCGACCcauccgaggUCGACCUgCGu -3'
miRNA:   3'- -GCUgGAGCCC------AAGCUGG---------AGCUGGA-GC- -5'
26278 3' -57.1 NC_005345.2 + 4735 0.69 0.477825
Target:  5'- -cGCgCUCGGGUUCaccgggcucgacucgGACCUCGAcggcacCCUCGc -3'
miRNA:   3'- gcUG-GAGCCCAAG---------------CUGGAGCU------GGAGC- -5'
26278 3' -57.1 NC_005345.2 + 29393 0.69 0.473869
Target:  5'- aCGG-CUCGGccgCcGCCUCGGCCUCGg -3'
miRNA:   3'- -GCUgGAGCCcaaGcUGGAGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 33148 0.69 0.46993
Target:  5'- gGGCCUCGGGcagcacgUCGcCCacagagguacggaCGACCUCGg -3'
miRNA:   3'- gCUGGAGCCCa------AGCuGGa------------GCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 45049 0.69 0.464052
Target:  5'- ---gCUCGGGggugugcccgUCGugCUCGACCgUCGg -3'
miRNA:   3'- gcugGAGCCCa---------AGCugGAGCUGG-AGC- -5'
26278 3' -57.1 NC_005345.2 + 26109 0.69 0.461127
Target:  5'- aCGACCUCGGcGggaugcagcuggUCGaguucgcccggauGCC-CGACCUCGg -3'
miRNA:   3'- -GCUGGAGCC-Ca-----------AGC-------------UGGaGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 29951 0.69 0.454342
Target:  5'- uCGACgUCGGGgccgUCGGgCUCGuCgUCGa -3'
miRNA:   3'- -GCUGgAGCCCa---AGCUgGAGCuGgAGC- -5'
26278 3' -57.1 NC_005345.2 + 31983 0.69 0.454342
Target:  5'- aCGGCCUCGGGUUCGACCn-------- -3'
miRNA:   3'- -GCUGGAGCCCAAGCUGGagcuggagc -5'
26278 3' -57.1 NC_005345.2 + 19000 0.69 0.444743
Target:  5'- uCGGCCcgagCGGGgcggCG-CCUCGACgUCGc -3'
miRNA:   3'- -GCUGGa---GCCCaa--GCuGGAGCUGgAGC- -5'
26278 3' -57.1 NC_005345.2 + 5638 0.7 0.407525
Target:  5'- gCGAgCgcCGGGUUCG-CCgCGACCUUGg -3'
miRNA:   3'- -GCUgGa-GCCCAAGCuGGaGCUGGAGC- -5'
26278 3' -57.1 NC_005345.2 + 18153 0.7 0.407525
Target:  5'- cCGGCgUCGGGUaCaGCCUCGG-CUCGg -3'
miRNA:   3'- -GCUGgAGCCCAaGcUGGAGCUgGAGC- -5'
26278 3' -57.1 NC_005345.2 + 11384 0.7 0.389662
Target:  5'- gCGGCCgccugCGGGcgagcagcUCGACCUCGACgaCGc -3'
miRNA:   3'- -GCUGGa----GCCCa-------AGCUGGAGCUGgaGC- -5'
26278 3' -57.1 NC_005345.2 + 8950 0.7 0.389662
Target:  5'- gGGCUgCGGGUgcUCGGgCUCGACCUg- -3'
miRNA:   3'- gCUGGaGCCCA--AGCUgGAGCUGGAgc -5'
26278 3' -57.1 NC_005345.2 + 26952 0.7 0.389662
Target:  5'- gCGACCggcugaUCGGGUUCGuCCUCGcgGCgUUCGa -3'
miRNA:   3'- -GCUGG------AGCCCAAGCuGGAGC--UG-GAGC- -5'
26278 3' -57.1 NC_005345.2 + 30798 0.71 0.372319
Target:  5'- uGACCgacuGG-UCGACCUCGACC-CGg -3'
miRNA:   3'- gCUGGagc-CCaAGCUGGAGCUGGaGC- -5'
26278 3' -57.1 NC_005345.2 + 40980 0.71 0.372319
Target:  5'- uCGACCUCGGcgUCGGCggCGACUUCc -3'
miRNA:   3'- -GCUGGAGCCcaAGCUGgaGCUGGAGc -5'
26278 3' -57.1 NC_005345.2 + 19865 0.71 0.35551
Target:  5'- -uGCCUCGGG--CGACCUCGaACCgcgCGc -3'
miRNA:   3'- gcUGGAGCCCaaGCUGGAGC-UGGa--GC- -5'
26278 3' -57.1 NC_005345.2 + 18994 0.71 0.350572
Target:  5'- uGGCCggCGGGa-CGACCUCGAcggguggcgcgccgcCCUCGg -3'
miRNA:   3'- gCUGGa-GCCCaaGCUGGAGCU---------------GGAGC- -5'
26278 3' -57.1 NC_005345.2 + 38608 0.71 0.345683
Target:  5'- -cGCCUCGGacacggcgaucUCGACgUCGGCCUCGg -3'
miRNA:   3'- gcUGGAGCCca---------AGCUGgAGCUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.