miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26278 5' -58.1 NC_005345.2 + 32035 1.05 0.001028
Target:  5'- cCUCGACCUCGGGUUCGACCUCGGGUUc -3'
miRNA:   3'- -GAGCUGGAGCCCAAGCUGGAGCCCAA- -5'
26278 5' -58.1 NC_005345.2 + 31999 0.96 0.004891
Target:  5'- cCUCGACCUCGGGUucgaccUCGACCUCGGGUUc -3'
miRNA:   3'- -GAGCUGGAGCCCA------AGCUGGAGCCCAA- -5'
26278 5' -58.1 NC_005345.2 + 32071 0.92 0.008547
Target:  5'- gCUCGACCUCGGGcUCGGCCUCGGGc- -3'
miRNA:   3'- -GAGCUGGAGCCCaAGCUGGAGCCCaa -5'
26278 5' -58.1 NC_005345.2 + 43354 0.8 0.073205
Target:  5'- gCUCGACCUCGGGgUCGGCC--GGGUa -3'
miRNA:   3'- -GAGCUGGAGCCCaAGCUGGagCCCAa -5'
26278 5' -58.1 NC_005345.2 + 32095 0.77 0.105526
Target:  5'- -----gCUCGGGUUCGACCUCGGGc- -3'
miRNA:   3'- gagcugGAGCCCAAGCUGGAGCCCaa -5'
26278 5' -58.1 NC_005345.2 + 23181 0.75 0.142922
Target:  5'- -cCGACgcgCUCGGGUUCGACCggcugCGGGa- -3'
miRNA:   3'- gaGCUG---GAGCCCAAGCUGGa----GCCCaa -5'
26278 5' -58.1 NC_005345.2 + 9962 0.72 0.236625
Target:  5'- -gCGGCC-CGGGUUCGGgCUgGGGUc -3'
miRNA:   3'- gaGCUGGaGCCCAAGCUgGAgCCCAa -5'
26278 5' -58.1 NC_005345.2 + 22516 0.72 0.249038
Target:  5'- cCUCGGCCUCGGuGUa-GuCCUCGGGc- -3'
miRNA:   3'- -GAGCUGGAGCC-CAagCuGGAGCCCaa -5'
26278 5' -58.1 NC_005345.2 + 41843 0.72 0.249038
Target:  5'- -cCGACUcaUCGGGgaCGACCUCGGcGUc -3'
miRNA:   3'- gaGCUGG--AGCCCaaGCUGGAGCC-CAa -5'
26278 5' -58.1 NC_005345.2 + 31788 0.72 0.255445
Target:  5'- gUCGACgcaCUCGGGUUCG-CCgucCGGGUc -3'
miRNA:   3'- gAGCUG---GAGCCCAAGCuGGa--GCCCAa -5'
26278 5' -58.1 NC_005345.2 + 24825 0.71 0.267988
Target:  5'- aUCGugCUCGGGUUCGACggCUCGcgcaagcGGUc -3'
miRNA:   3'- gAGCugGAGCCCAAGCUG--GAGC-------CCAa -5'
26278 5' -58.1 NC_005345.2 + 33018 0.71 0.275474
Target:  5'- gUCGACgaUCGGGcUCGGCCgCGGGg- -3'
miRNA:   3'- gAGCUGg-AGCCCaAGCUGGaGCCCaa -5'
26278 5' -58.1 NC_005345.2 + 29408 0.7 0.311614
Target:  5'- cCUCGGCCUCGG--UCG-CCUCGcGGg- -3'
miRNA:   3'- -GAGCUGGAGCCcaAGCuGGAGC-CCaa -5'
26278 5' -58.1 NC_005345.2 + 31710 0.7 0.318489
Target:  5'- -aCGGuCCUCGGGUgcgcggacgggguUCGggugcACCUCGGGUg -3'
miRNA:   3'- gaGCU-GGAGCCCA-------------AGC-----UGGAGCCCAa -5'
26278 5' -58.1 NC_005345.2 + 35411 0.7 0.334972
Target:  5'- cCUCGAUgUCGucgucguccGGUUCGGCgUCGGGg- -3'
miRNA:   3'- -GAGCUGgAGC---------CCAAGCUGgAGCCCaa -5'
26278 5' -58.1 NC_005345.2 + 26952 0.7 0.343038
Target:  5'- -gCGACCggcugaUCGGGUUCGuCCUCGcGGc- -3'
miRNA:   3'- gaGCUGG------AGCCCAAGCuGGAGC-CCaa -5'
26278 5' -58.1 NC_005345.2 + 43954 0.68 0.412482
Target:  5'- -cCGGCCgugcCGGGgcgGACCUCGGGc- -3'
miRNA:   3'- gaGCUGGa---GCCCaagCUGGAGCCCaa -5'
26278 5' -58.1 NC_005345.2 + 31101 0.67 0.450309
Target:  5'- gCUCGGgUUCGGGUUCGAggugcaCGGGUUc -3'
miRNA:   3'- -GAGCUgGAGCCCAAGCUgga---GCCCAA- -5'
26278 5' -58.1 NC_005345.2 + 16481 0.67 0.460061
Target:  5'- gUCGACCUCGGccucgaCGGCgUCGaGGUUg -3'
miRNA:   3'- gAGCUGGAGCCcaa---GCUGgAGC-CCAA- -5'
26278 5' -58.1 NC_005345.2 + 4339 0.67 0.460061
Target:  5'- aUCGGCCgagcCGGGgUCcuGCCUCGGGc- -3'
miRNA:   3'- gAGCUGGa---GCCCaAGc-UGGAGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.