miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26279 3' -56.2 NC_005345.2 + 32808 0.66 0.645478
Target:  5'- uCGGCGCguuCCGCGAggcacUCGGGAagcAGugGg -3'
miRNA:   3'- -GCUGCGgcuGGCGCU-----AGUCCU---UCugC- -5'
26279 3' -56.2 NC_005345.2 + 13779 0.66 0.645478
Target:  5'- -cGCGCCGAaCGCGggCuuGAGGACGc -3'
miRNA:   3'- gcUGCGGCUgGCGCuaGucCUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 8558 0.66 0.645478
Target:  5'- cCGugcuCGCCGGCUGCGAUCGuccauGcGGGCGu -3'
miRNA:   3'- -GCu---GCGGCUGGCGCUAGUc----CuUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 21430 0.66 0.645478
Target:  5'- gCGAgGCCGGCCGCG-UCugc-GGACa -3'
miRNA:   3'- -GCUgCGGCUGGCGCuAGuccuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 6694 0.66 0.644393
Target:  5'- uCGGCGUCGauaucGCCGCGcgUGGGGAcgccgauGACGa -3'
miRNA:   3'- -GCUGCGGC-----UGGCGCuaGUCCUU-------CUGC- -5'
26279 3' -56.2 NC_005345.2 + 2587 0.66 0.642222
Target:  5'- cCGAgGCUGACgGCGA--GGGAuaccucaugcgcgcGGACGg -3'
miRNA:   3'- -GCUgCGGCUGgCGCUagUCCU--------------UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 35000 0.67 0.634623
Target:  5'- uCGGCGCCGgggcGCUGCGG-CGGccacguGggGGCGg -3'
miRNA:   3'- -GCUGCGGC----UGGCGCUaGUC------CuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 44474 0.67 0.634623
Target:  5'- gGGCGUCGAgC-CGAgCAGcGAAGGCGa -3'
miRNA:   3'- gCUGCGGCUgGcGCUaGUC-CUUCUGC- -5'
26279 3' -56.2 NC_005345.2 + 40986 0.67 0.634623
Target:  5'- uCGGCGUCGGCgGCGAcuUCcuGGuucAGGCGa -3'
miRNA:   3'- -GCUGCGGCUGgCGCU--AGu-CCu--UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 43930 0.67 0.624851
Target:  5'- gCGAUcagGCCGGCCGCGAgcugcccggccgugcCGGGGcggaccucGGGCGa -3'
miRNA:   3'- -GCUG---CGGCUGGCGCUa--------------GUCCU--------UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 11602 0.67 0.623765
Target:  5'- uGGCGUggggCGGCCGCuggCGGGAguGGGCGg -3'
miRNA:   3'- gCUGCG----GCUGGCGcuaGUCCU--UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 29990 0.67 0.623765
Target:  5'- uCGGCGUccuCGGCCGgGGUCcGGguGGCGc -3'
miRNA:   3'- -GCUGCG---GCUGGCgCUAGuCCuuCUGC- -5'
26279 3' -56.2 NC_005345.2 + 22801 0.67 0.623765
Target:  5'- cCGACGCCcacACCGCGGaCGGcGAcGGCa -3'
miRNA:   3'- -GCUGCGGc--UGGCGCUaGUC-CUuCUGc -5'
26279 3' -56.2 NC_005345.2 + 4388 0.67 0.612915
Target:  5'- aCGGCGCCgcauGAgCGCGAUCGacaaggcccGGAagcAGGCGc -3'
miRNA:   3'- -GCUGCGG----CUgGCGCUAGU---------CCU---UCUGC- -5'
26279 3' -56.2 NC_005345.2 + 39859 0.67 0.612915
Target:  5'- -aACGCCGGCCGCGAgguacgcCGcGGccGACa -3'
miRNA:   3'- gcUGCGGCUGGCGCUa------GU-CCuuCUGc -5'
26279 3' -56.2 NC_005345.2 + 48577 0.67 0.612915
Target:  5'- gGGCGCCGAugagcUCGCGG-CGGGcgAGGACc -3'
miRNA:   3'- gCUGCGGCU-----GGCGCUaGUCC--UUCUGc -5'
26279 3' -56.2 NC_005345.2 + 40276 0.67 0.612915
Target:  5'- aCGACGgcCCGGCCGUGAUCGu--GGGCc -3'
miRNA:   3'- -GCUGC--GGCUGGCGCUAGUccuUCUGc -5'
26279 3' -56.2 NC_005345.2 + 22928 0.67 0.602081
Target:  5'- aGACGCCG-CCauGCGGUuCAGGAucccAGAUu -3'
miRNA:   3'- gCUGCGGCuGG--CGCUA-GUCCU----UCUGc -5'
26279 3' -56.2 NC_005345.2 + 44028 0.67 0.602081
Target:  5'- -cAUGCCGcACCGCcg-UAGGAGGGCa -3'
miRNA:   3'- gcUGCGGC-UGGCGcuaGUCCUUCUGc -5'
26279 3' -56.2 NC_005345.2 + 42470 0.67 0.602081
Target:  5'- uCGACGCCGagGCCGUcGUCGaGGAGAUc -3'
miRNA:   3'- -GCUGCGGC--UGGCGcUAGUcCUUCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.