miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2628 5' -53.6 NC_001491.2 + 24623 0.66 0.957574
Target:  5'- cGGGGcgGcCGCU-GCCGCGGCg---- -3'
miRNA:   3'- uCCCCuuU-GCGAuUGGUGCCGagauu -5'
2628 5' -53.6 NC_001491.2 + 28278 0.66 0.953599
Target:  5'- cGGGGGGuCGCU--CgGCGGCUCc-- -3'
miRNA:   3'- uCCCCUUuGCGAuuGgUGCCGAGauu -5'
2628 5' -53.6 NC_001491.2 + 51747 0.66 0.944915
Target:  5'- aAGGGuGGggUGUUGGCCACGuGCccucaaUCUAAc -3'
miRNA:   3'- -UCCC-CUuuGCGAUUGGUGC-CG------AGAUU- -5'
2628 5' -53.6 NC_001491.2 + 4839 0.67 0.912806
Target:  5'- cGGGGGAAGCgGCgccggAGCgGCaGCUCUu- -3'
miRNA:   3'- -UCCCCUUUG-CGa----UUGgUGcCGAGAuu -5'
2628 5' -53.6 NC_001491.2 + 101872 0.68 0.900073
Target:  5'- uGGGGAcauuuCGCUAcaACCAUGGaCUCg-- -3'
miRNA:   3'- uCCCCUuu---GCGAU--UGGUGCC-GAGauu -5'
2628 5' -53.6 NC_001491.2 + 24657 0.68 0.893333
Target:  5'- gGGGGGGGAUGCgcGCCccgagGCGGCgCUc- -3'
miRNA:   3'- -UCCCCUUUGCGauUGG-----UGCCGaGAuu -5'
2628 5' -53.6 NC_001491.2 + 68548 0.68 0.893333
Target:  5'- uGGGGGcGACGCUGGCaccgacauCGGCUaUGAg -3'
miRNA:   3'- -UCCCCuUUGCGAUUGgu------GCCGAgAUU- -5'
2628 5' -53.6 NC_001491.2 + 97937 0.68 0.886349
Target:  5'- uGGGuGggGCGCccgcuACCgaGCGGCUUUGAc -3'
miRNA:   3'- uCCC-CuuUGCGau---UGG--UGCCGAGAUU- -5'
2628 5' -53.6 NC_001491.2 + 5622 0.69 0.863978
Target:  5'- cGGGGcGAAgucgcuGCGCUGgcugGCCAUGGCgugCUAGc -3'
miRNA:   3'- -UCCC-CUU------UGCGAU----UGGUGCCGa--GAUU- -5'
2628 5' -53.6 NC_001491.2 + 34973 0.69 0.863978
Target:  5'- gGGGGGAcucucGGCGCUGcUgGCGGCcCUGGg -3'
miRNA:   3'- -UCCCCU-----UUGCGAUuGgUGCCGaGAUU- -5'
2628 5' -53.6 NC_001491.2 + 11228 0.69 0.84794
Target:  5'- uAGGGGAAACGCc-GCCugGGa--UGAg -3'
miRNA:   3'- -UCCCCUUUGCGauUGGugCCgagAUU- -5'
2628 5' -53.6 NC_001491.2 + 37230 0.69 0.831065
Target:  5'- gGGGGuGAGACGCgggcugggggGGCCA-GGCUCUc- -3'
miRNA:   3'- -UCCC-CUUUGCGa---------UUGGUgCCGAGAuu -5'
2628 5' -53.6 NC_001491.2 + 31978 0.7 0.79507
Target:  5'- cGGGGAAcgguCGCcgGGCCACgGGCUCc-- -3'
miRNA:   3'- uCCCCUUu---GCGa-UUGGUG-CCGAGauu -5'
2628 5' -53.6 NC_001491.2 + 141183 0.7 0.785655
Target:  5'- cAGGGuGGAAUccucgcugGCUGGCCGCGGCUg--- -3'
miRNA:   3'- -UCCC-CUUUG--------CGAUUGGUGCCGAgauu -5'
2628 5' -53.6 NC_001491.2 + 7682 0.71 0.746621
Target:  5'- gGGGGGggGCGCUAaaauacgguuACC-CGGCa---- -3'
miRNA:   3'- -UCCCCuuUGCGAU----------UGGuGCCGagauu -5'
2628 5' -53.6 NC_001491.2 + 82457 0.72 0.674577
Target:  5'- cGGGGGAGAUGCUGccGCUAUGGUUa--- -3'
miRNA:   3'- -UCCCCUUUGCGAU--UGGUGCCGAgauu -5'
2628 5' -53.6 NC_001491.2 + 88427 0.72 0.664058
Target:  5'- uGGGGGGcuuGGCGUggUGGgUACGGCUCUAAc -3'
miRNA:   3'- -UCCCCU---UUGCG--AUUgGUGCCGAGAUU- -5'
2628 5' -53.6 NC_001491.2 + 82076 0.75 0.545369
Target:  5'- aGGGGGAAgauacgaacggggcGCGCUAaacgGCCAUGGCguUCUAGa -3'
miRNA:   3'- -UCCCCUU--------------UGCGAU----UGGUGCCG--AGAUU- -5'
2628 5' -53.6 NC_001491.2 + 148945 0.75 0.527952
Target:  5'- gGGGGGAGAUGggGGCCA-GGCUCUc- -3'
miRNA:   3'- -UCCCCUUUGCgaUUGGUgCCGAGAuu -5'
2628 5' -53.6 NC_001491.2 + 144757 1.06 0.006154
Target:  5'- cAGGGGAAACGCUAACCACGGCUCUAAu -3'
miRNA:   3'- -UCCCCUUUGCGAUUGGUGCCGAGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.