miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26280 3' -60.1 NC_005345.2 + 36187 0.66 0.406296
Target:  5'- -gGUCGAUCuCGGCCUGCGCgUcGgaCa -3'
miRNA:   3'- gaCAGCUAGcGCCGGGCGUGgA-CgaG- -5'
26280 3' -60.1 NC_005345.2 + 34239 0.66 0.39728
Target:  5'- -cGcCGcgcCGCGGCCCGCuucGCCcgcUGCUCc -3'
miRNA:   3'- gaCaGCua-GCGCCGGGCG---UGG---ACGAG- -5'
26280 3' -60.1 NC_005345.2 + 47097 0.66 0.396386
Target:  5'- --uUCGc-CGCGGCCCGCcgggccgcgccggGCCcGCUCg -3'
miRNA:   3'- gacAGCuaGCGCCGGGCG-------------UGGaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 1343 0.67 0.388395
Target:  5'- ----gGGUCGCGGUaaCGCGCCUGC-Ca -3'
miRNA:   3'- gacagCUAGCGCCGg-GCGUGGACGaG- -5'
26280 3' -60.1 NC_005345.2 + 19158 0.67 0.388395
Target:  5'- -cGUCG-UCGCcgGGCCCGUACggCUGCcCg -3'
miRNA:   3'- gaCAGCuAGCG--CCGGGCGUG--GACGaG- -5'
26280 3' -60.1 NC_005345.2 + 1630 0.67 0.387513
Target:  5'- -gGUCGGUCGCGGCgaacucgCgGUACCgagugugGUUCg -3'
miRNA:   3'- gaCAGCUAGCGCCG-------GgCGUGGa------CGAG- -5'
26280 3' -60.1 NC_005345.2 + 34848 0.67 0.371019
Target:  5'- ----gGAUCGCGGCgCuCGUgacCCUGCUCg -3'
miRNA:   3'- gacagCUAGCGCCG-G-GCGu--GGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 42165 0.67 0.371019
Target:  5'- --aUCGAcaGCGGCCCcgaaaGCGCCUGC-Cg -3'
miRNA:   3'- gacAGCUagCGCCGGG-----CGUGGACGaG- -5'
26280 3' -60.1 NC_005345.2 + 17452 0.67 0.371019
Target:  5'- aUGUCGAgCGUgaacgcccaacGGgCUGCGCCUGuCUCg -3'
miRNA:   3'- gACAGCUaGCG-----------CCgGGCGUGGAC-GAG- -5'
26280 3' -60.1 NC_005345.2 + 42866 0.67 0.371019
Target:  5'- ---aUGAagGCGGcCCCGCACgUGCUg -3'
miRNA:   3'- gacaGCUagCGCC-GGGCGUGgACGAg -5'
26280 3' -60.1 NC_005345.2 + 37692 0.67 0.362533
Target:  5'- -cGUCGGcCGUGGgCCGCcaguCCUGCg- -3'
miRNA:   3'- gaCAGCUaGCGCCgGGCGu---GGACGag -5'
26280 3' -60.1 NC_005345.2 + 22295 0.67 0.362533
Target:  5'- gCUGUCGGgcaCGuuGCCCGCGCUcgGCg- -3'
miRNA:   3'- -GACAGCUa--GCgcCGGGCGUGGa-CGag -5'
26280 3' -60.1 NC_005345.2 + 8187 0.67 0.362533
Target:  5'- -gGUCGAUCGCGaaagacgccGCCUGCACgaGaUCg -3'
miRNA:   3'- gaCAGCUAGCGC---------CGGGCGUGgaCgAG- -5'
26280 3' -60.1 NC_005345.2 + 8977 0.67 0.354182
Target:  5'- --cUCGAUCGCaGCUgCGCGCCguacacGCUCa -3'
miRNA:   3'- gacAGCUAGCGcCGG-GCGUGGa-----CGAG- -5'
26280 3' -60.1 NC_005345.2 + 45683 0.67 0.354182
Target:  5'- -cGUCGAggcaugucCGaCaGCCCGCGCgaGCUCg -3'
miRNA:   3'- gaCAGCUa-------GC-GcCGGGCGUGgaCGAG- -5'
26280 3' -60.1 NC_005345.2 + 40632 0.67 0.354182
Target:  5'- -gGUCGAg-GCGGCCCGUcCaCUGC-Ca -3'
miRNA:   3'- gaCAGCUagCGCCGGGCGuG-GACGaG- -5'
26280 3' -60.1 NC_005345.2 + 41845 0.67 0.345968
Target:  5'- -cGUCGcacCGCGGCUCGU-CCUGCg- -3'
miRNA:   3'- gaCAGCua-GCGCCGGGCGuGGACGag -5'
26280 3' -60.1 NC_005345.2 + 40547 0.67 0.345968
Target:  5'- -cGU-GAUCGCcgagcuGCCCG-ACCUGCUCa -3'
miRNA:   3'- gaCAgCUAGCGc-----CGGGCgUGGACGAG- -5'
26280 3' -60.1 NC_005345.2 + 3935 0.68 0.337891
Target:  5'- -cGUCGAggugcucgcCGCGGCCgGCAgCCU-CUCg -3'
miRNA:   3'- gaCAGCUa--------GCGCCGGgCGU-GGAcGAG- -5'
26280 3' -60.1 NC_005345.2 + 43032 0.68 0.337091
Target:  5'- -cGUCG-UCgGCGG-CCGCACCUacgcgcgGCUCg -3'
miRNA:   3'- gaCAGCuAG-CGCCgGGCGUGGA-------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.